IMOD Help Index

• Listing of IMOD programs by category with links to man pages.
• IMOD Guide to installation and other introductory topics
• 3dmod and Midas
• Introduction to 3dmod.
• Help pages for 3dmod.
• Help pages for Midas interface controls, mouse actions, and hot keys
• Tomographic Reconstruction and Etomo
• Tomography guide.
• Tomography guide advanced topics.
• Batch reconstruction guide.
• Using Etomo.
• Tutorial on building tomograms with Etomo.
• Tutorial on doing batch reconstruction through Etomo.
• Tutorial on reconstructing with SIRT and a SIRT-like filter.
• Serial Tomograms and Sections
• Guide for joining tomograms from serial sections.
• Tutorial on joining serial section tomograms with Etomo.
• Serial Section Alignment and Montage Blending.
• Cryo-tomography and CTF Correction
• Tutorial on reconstructing a cryo-tomogram with fiducials.
• Tutorial on reconstructing a cryosection with patch tracking.
• Guide to using Ctfplotter.
• Tutorial on finding defocus with Ctfplotter.
• Tutorial on filtering with Nonlinear Anistropic Diffusion (NAD).
• PEET Guide.
• Directives for batch processing and Etomo templates.
• Instructions for calibrating distortion correction.


• IMOD library documentation.
• MRC file format as used in IMOD.
• HDF5 file format implemented in IMOD.
• IMOD binary model file format
• IMOD ascii model file format