Content-type: text/html Manpage of MOTL2Slicer

MOTL2Slicer

Section: User Commands (1)
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NAME

MOTL2Slicer - convert Z-X-Z Euler angles to Z-Y-X "Slicer" angles  

SYNOPSIS

MOTL2Slicer
MOTL2Slicer inputFilename outputFilename
MOTL2Slicer inputFilename outputFilename flgInvert  

DESCRIPTION

MOTL2Slicer converts one or more Z-X-Z Euler angles (in degrees) to corresponding or inverse Z-Y-X Slicer angles, and will either print the results or save them to an output file in comma separated value format. If no arguments are supplied, the program will prompt the user for Euler angles, and will display the corresponding Slicer angles. Conversely, if input and output filenames are provided, results will be read from and written to these files. Input files can be in either of 2 formats. If every line of the input file contains 3 comma separated values, each line will be taken as Z1, X, and Z2 angles in degrees. Alternatively, if every line after the first contains 20 comma separated values, the file will be assumed to be a motive list, and Z1, X, and Z2 will be taken from columns 17, 19, and 18, respectively.

By default, the output Slicer angles will correspond to the inverse of the transform specified by the input Euler angles. If the uninverted transform is desired, set flgInvert to 0.

inputFilename (optional)
is the path to either a motive list or a coma separated value file with 3 columns containing the Z-X-Z Euler angles tp be converted.
outputFilename (optional)
is the name to which the output Slicer angles will be written. Note that Slicer angles are written in the order X (1st), Y (2nd), and Z (3rd) even though they are to be applied in the order Z-Y-X.
flgInvert (optional, default = 1)
If 0, Slicer angles corresponding to the original tranform (rather than its inverse) will be output.
 

AUTHOR

John Heumann  

SEE ALSO

PEET(1), MOTL2Relion(1), slicer2MOTL(1), and slicer2Relion(1)


 

Index

NAME
SYNOPSIS
DESCRIPTION
AUTHOR
SEE ALSO

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Time: 18:16:05 GMT, January 11, 2021