Content-type: text/html Manpage of MOTL2Relion

MOTL2Relion

Section: User Commands (1)
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NAME

MOTL2Relion - convert Z-X-Z angles to Relion Z-Y-X (or other) angles  

SYNOPSIS

MOTL2Relion
MOTL2Relion inputFilename outputFilename
MOTL2Relion inputFilename outputFilename flgInvert
MOTL2Relion inputFilename outputFilename flgInvert flgFlip
MOTL2Relion inputFilename outputFilename flgInvert flgFlip sequence  

DESCRIPTION

MOTL2Relion converts one or more Z-X-Z angles in degrees to corresponding or inverse Relion Z-Y-Z angles, and either prints the results or saves them to an output file in comma separated value format. If no arguments are supplied, the program will prompt for the input angles, and will display the results. Conversely, if input and output filenames are provided, results will be read from and written to these files. The input file can be in either of 2 formats. If every line of the input file contains 3 comma separated values, each line will be taken as the Z1-X-Z2 angles in degrees. Alternatively, if every line after the first contains 20 comma separated values, the file will be assumed to be a motive list, and Z1, X, and Z2 will be read from columns 17, 19, and 18, respectively.

By default, the output angles will correspond to the transform specified by the input angles. If an inverse transform is desired, set flgInvert to 1. Output Euler or Tait-Bryan output angle conventions other than "ZXZ" can be specified in the "sequence" parameter.

inputFilename (optional)
is the path to either a motive list or a coma separated value file with 3 columns containing the Z-X-Z Euler angles to be converted.
outputFilename (optional)
is the name to which the output angles will be written.
flgInvert (optional, default = 0)
If non-zero, angles corresponding to the inverted tranform (rather than the original) will be output.
flgFlip (optional, defalt = 0)
if non-zero, flip the signs of the output angles.
sequence (optional, default 'ZYZ')
The rotation sequence to be used for the output angles. The default, compatible with Xmipp and Frealign, among others.
 

AUTHOR

John Heumann  

SEE ALSO

PEET(1), MOTL2Slicer(1), relion2MOTL(1), and slicer2MOTL(1)


 

Index

NAME
SYNOPSIS
DESCRIPTION
AUTHOR
SEE ALSO

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Time: 18:16:05 GMT, January 11, 2021