SerialEMLibs is a repository for libraries used by SerialEM and SerialEMCCD.
It should be located in a folder adjacent to the folders for those projects.

See the Copyright.txt in SerialEM and ReadMe.txt in SerialEMCCD for
descriptions of various license terms.

See the file libimod/README-VIS.STUDIO.txt in the IMOD source package for
descriptions of how the IMOD libraries here are built in Visual Studio.  See
the file ReadMe.txt in the SerialEM source for instructions on modifying the
configurations there to use some of the alternative libraries here.

The libctffind files here are a bit different from other variations:
libctffind.lib is from a regular build of IMOD with Intel compilers.
Specifically, they are built with the 2015 Intel C++ compiler used with the
VS2013 toolset, in order to maintain compatibility with Windows XP.   A
SerialEM built with this will depend on the libctffind.dll built in IMOD
and Intel libraries libiomp5md.dll and libmmd.dll, all distributed with
SerialEM.  A 32-build will also depend on msvrc120.dll and msvc120.dll.
The libctffind-VCOMP.dll and libctffind-VCOMP.lib are built with
Visual Studio against vcomp.lib instead of libiomp5md.lib; SerialEM built with
libctffind-VCOMP.lib will depend only on the libctffind-VCOMP.dll included
here.

Here is a table of what libraries are used in what builds.  v90 and v140 refer
to the toolsets installed by VS2008 and VS2015, respectively.  Higher versions
of Visual Studio offer a selection of toolsets if earlier versions are
installed.

The current building procedure when a library needs updating in either
SerialEM or SerialEMCCD is as follows.  If libcfshr or libiimod needs updating
in SerialEMCCD, open libimod/libimod.sln in VS2008, build Release x64 for
whichever needs updating, and copy the resulting lib's to here.  Then open
libimod/libimod14.sln in VS2015, and build Release Win32 and Release x64 for
libcfshr, libiimod, and/or libimod, Intel-OMP Win32 and Win64 for libcfshr
and/or libiimod, and DLL-Release x64 for the noHDF version of libiimod if that
needs updating SerialEMCCD. Copy libcfshr*.lib, libiimod*.lib, and/or
libimod*.lib to here.

                        SerialEM with MKL  Intel-free SerialEM  SerialEMCCD
                          32-bit 64-bit       32-bit 64-bit      v90  v140
hdf5-14.lib                  X                   X 
hdf5-14-64.lib                     X                   X

libcfshr-64.lib                                                   X
libcfshr-14.lib                                  X
libcfshr-14-64.lib                                     X                X
libcfshr-IOMP.lib            X
libcfshr-IOMP-64.lib               X

libctffind.lib               X
libctffind-VCOMP.dll                             X
libctffind-VCOMP-14.lib                          X
x64/libctffind.lib                 X
x64/libctffind-VCOMP.dll                               X
x64/libctffind-VCOMP-14.lib                            X

libifft-64.lib                                                    X  
libifft-14.lib                                   X
libifft-14-64.lib                                      X                X 
libifft-MKL.lib              X
libifft-MKL-64.lib                 X

libiimod-64.lib                                                   X
libiimod-14.lib                                  X
libiimod-14-64.lib                                     X         
libiimod-noHDF-14-64.lib                                                X
libiimod-IOMP.lib            X
libiimod-IOMP-64.lib               X

libimod.lib                  X                   X
libimod-64.lib                     X                   X

libimxml-64.lib                                                   X
libimxml-14.lib              X                   X
libimxml-14-64.lib                 X                   X                X

libiomp5md.lib               X
x64/libiomp5md.lib                 X

libjpeg-64.lib                                                    X
libjpeg-14.lib               X                   X
libjpeg-14-64.lib                  X                   X                X

libtiff-64.lib                                                    X
libtiff-14.lib               X                   X
libtiff-14-64.lib                  X                   X                X

zlib.lib                     X                   X                X
zlib-64.lib                        X                   X                X