Boulder Laboratory for 3-Dimensional Electron Microscopy of Cells FILLTOMO(1) FILLTOMO(1) NAME filltomo - Replace pixels in combined tomogram with values from one SYNOPSIS filltomo DESCRIPTION FILLTOMO improves a combined tomogram from a two-axis tilt series by replacing pixels in locations where the "matching" tomogram had no data with the values from the tomogram that was matched to. It determines a linear scaling between the latter tomogram and the combined tomogram so that the intensities will match as well as possible. Inputs to the program: Name of combined tomogram file Name of the tomogram that was matched TO, which will be the source of replacement values Either the name of the tomogram that was transformed to match, or the X, Y and Z dimensions of that file Name of file containing inverse transformation used by MATCHVOL Number of pixels to replace unconditionally along the four sides of the tomogram when in flipped orientation. Enter four numbers, for the number of pixels on the left (lower X), right (upper X), bottom (lower Y in flipped tomogram), and top (upper Y) edges. HISTORY Written by David Mastronarde, November 1995