Raw data

dataset.st

dataseta.st, datasetb.st

Pre-processing

dataset.st

moves raw data to dataset_orig.st

intermediate stack name dataset_fixed.st

dataseta.st, datasetb.st

moves raw data to dataset_orig{a|b}.st

intermediate stack name dataset_fixed{a|b}.st

Coarse Alignment

dataset.preali

dataseta.preali, datasetb.preali

Fiducial Model Generation

N/A

N/A

Fine Alignment

dataset.ali

dataseta.ali, datasetb.ali

Tomogram Positioning

top.rec, mid.rec, bot.rec

topa.rec, mida.rec, bota.rec, topb.rec, midb.rec, botb.rec

Tomogram Generation

dataset.rec

renamed to full.rec when the post processing dialog is open. This causes a problem if the user opens the post-processing dialog and then goes back to the tomogram generation dialog. They can not open the tomogram any more because of the rec name change

dataseta.rec, datasetb.rec

Tomogram Combination

N/A

sum.rec

Post Processing

dataset.rec

dataset.rec