Bug Fixes for IMOD 5.1.3

6/3/25: Fixed image drawing when window is resized in on Mac (Qt6).

5/29/25: Fixed a problem in the BatchRunTomo interface that mainly appears on a cluster. When running batchruntomo with processchunks, the steps were not displayed, and the resume button was not enabled after a kill or pause.

5/27/25: Fixed crash from unlinking first linked slicer.

5/24/25: Fixed Beadtrack handling of boxes near edge.

5/22/25: Fixed meshing crash when capping.

5/8/25: Fixed problems with pausing, resuming, and reconnecting to processes on a cluster.

5/3/25: Fixed Processchunks pausing on a cluster queue when no jobs are running yet.

4/30/25: Made it possible for 3dmod to read shared memory files created with Manageshrmem.

4/22/25: In Align Frames interface, switched the Rotation/flip fields to Basic mode.

4/12/25: In Final Aligned Stack, added informational text about the "Diameter to erase" field in the Erase Gold tab.

4/12/25: In Fine Alignment, fixed reloading beam tilt after running restrictalign.

4/12/25: Fixed message from Fine Alignment when prealigned stack is missing and allowed it to run without stack.

Bug Fixes for IMOD 5.1.2

4/7/25: In Final Aligned Stack, adding UnbinnedPixelSize when it is missing.

4/4/25: Fixed message from Fine Alignment when prealigned stack is missing and allowed it to run without stack.

4/3/25: Made Alignframes assume MRC frame stacks with no titles, grid size 1, and min/max 0 are from Thermo/FEI software and need inversion.

4/1/25: Fixed Batchruntomo putting bad option in ctfcorrection.com.

2/28/25: Fixed Tilt reprojecting a model to not put out garbage points for excluded views.

2/26/25: Fixed 3dmodbg, 3dmodv, processchunksbg missing on Windows.

Bug Fixes for IMOD 5.1.1

2/25/25: Fixed failure to rename image files to backup name in Etomo.

2/2/25: Made changes to protect against the wrong diameter being used for bead erasing when doing 3D CTF correction with raw input.

1/19/25: Fixed "Just Reload" in 3dmod image reload dialog when there is only one image file.

1/22/25: Fixed 3dmod image processing window doing FFT by mistake after being opened with Shift F.

1/20/25: Fixed Restrictalign failing to turn off ProjectionStretch in com file (In 5.1).

1/14/25: Changed option to Ctfphaseflip to take unbinned pixel size, which is inserted by Copytomocoms and does not need to be managed.

1/8/25: Fixed Autofidseed to use the scalable sigma value used in cryo template for kernel filtering with the Sobel filter.

1/8/25: Added option to Ctfphaseflip to specify the binning of the input images so that it can adjust alignment shifts.

1/3/25: Fixed crash and model scaling problem when using the -add option to Imodfindbeads.