Bug Fixes for IMOD 3.7.11

7/4/06: Fixed finishjoin problems with line endings on Windows.

6/29/06: Fixed fatal problem in tomosnapshot caused by change on 6/6/06.

6/24/06: Fixed Copytomocoms and Setupcombine to work around a change in Cygwin sed 4.1.5.

6/23/06: Fixed etomo startup script for SGI (broke 4/21/06).

6/6/06: Fixed control-character stripping for Windows in Copytomocoms, Makejoincom, Tomosnapshot, Trimvol.

6/6/06: Made Copytomocoms put control-character stripping commands in sample.com for Windows.

5/4/06: Fixed contour copy in the line tracker for Windows with Intel compiler 8+.

4/21/06: In etomo startup script, set LD_ASSUME_KERNEL only for a 2.4 kernel so it will work in FC5.

4/10/06: Fixed bug in Beadtrack error check of box size.

2/27/06: Displaying all copytomocoms error messages and warnings to the user.

2/26/06: Increased maximum box size in Beadtrack to 100 pixels and added error check.

2/22/06: Fixed a bug in Combine where Replace Patch Vectors fails when patch.out is missing.

2/23/06: Changed Extracttilts to exit with error when there are no entries for the requested item, and made Copytomocoms pass error on.

2/20/06: Fixed archiving of original stack to work under Windows.

2/15/06: Revised scripts to use new header and strip control characters from output of header and other programs, since new sed in cygwin does not take care of this unless CYGWIN is set to nobinmode.

2/15/06: Made Header take options and produce simple output when given an option so that scripts can get numbers more easily.

2/6/06: Made default ccderaser radius vary with fiducial size.

2/3/06: Fixed linklibs-mac for new library.

2/3/06: Fixed running tomosnapshot from eTomo under Windows.