Content-type: text/html Manpage of simpleFSC

simpleFSC

Section: User Commands (1)
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NAME

simpleFSC - plot Fourier Shell Correlation from a pair of volumes  

SYNOPSIS

simpleFSC file1 file2
simpleFSC file1 file2 fShells
simpleFSC file1 file2 fShells windowName windowParams windowCenter  

DESCRIPTION

simpleFSC will calculate and plot the Fourier Shell Correlation (FSC) from a pair of MRC volumes containing independent averages from half data sets. It is useful when the 2 half data set averages have already been computed. It is less flexible than calcFSC / plotFSC, but is much faster since it does not recompute averages. In addition to plotting the FSC, the corresponding values (spatial frequency in lp/nm and correlation) will be written to file simpleFSC.csv.
file1, file2
The names of the 2 input MRC volumes.
fShells
An optional string evaluating to a MATLAB vector containing the upper edges of the desired frequency shells. If ommitted, the shells will be determined automatically.
windowName = string
Optional mask type to apply to the data... 'gaussian', 'hamming', etc. The default is 'gaussian'. If windowName is 'file', windowParams must be a string with the name of an MRC file containing the mask. A windowName of 'none' can be used to disable masking.
windowParams = vector
The parameters to pass to the window generation function. For a gaussian window the parameters are [radius sigma] as fractions of input volume size. The default is [0.35 0.05].
windowCenter = vector
The center of the mask window (default: [ ] = volume center, which corresponds to floor(szVol/2)+1).
 

AUTHOR

John Heumann  

SEE ALSO

PEET(1), calcFSC(1), calcUnbiasedFSC(1), plotFSC(1)


 

Index

NAME
SYNOPSIS
DESCRIPTION
AUTHOR
SEE ALSO

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Time: 21:10:06 GMT, March 20, 2017