Content-type: text/html Manpage of prepareRef

prepareRef

Section: User Commands (1)
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NAME

prepareRef - prepare an initial reference for the alignment search  

SYNOPSIS

prepareRef file.prm  

DESCRIPTION

prepareRef generates the initial reference for the alignment search, using an initial volume or a specified particle out of those included in the search. In the latter case, it computes how large the reference must be to allow rotation to match volumes with arbitrary orientations. The parameter file is a MATLAB readable text file that specifies the parameter values in MATLAB syntax. See PEET(1) man page for a description of the parameter file options and syntax.  

FILES

Sample parameter files are available in $PARTICLE_DIR/templates.  

AUTHORS

Quanren Xiong
John M. Heumann  

SEE ALSO

PEET(1), prmParser(1), prepareEM(1), mergeEM(1), alignSubset(1), averageAll(1), removeDuplicates(1), calcFSC(1), and calcSSNR(1)


 

Index

NAME
SYNOPSIS
DESCRIPTION
FILES
AUTHORS
SEE ALSO

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Time: 21:10:05 GMT, March 20, 2017