Content-type: text/html Manpage of modifyRotAxes

modifyRotAxes

Section: User Commands (1)
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NAME

modifyRotAxes - update particle rotation axes to reflect the change in rotations between two motive lists. Typically, the first motive list will have been generate by a program such as spikeInit or stalkInit, while the second will reflect a refinement of that initial alignment.  

SYNOPSIS

modifyRotAxes fnAxesIn fnAxesOut fnMOTL1 fnMOTL2  

DESCRIPTION

Modify the contents of a rotation axes file to reflect the change in rotations between motive lists fnMOTL1 and fnMOTL2.
fnAxesIn
The file name of the input rotation axes file in csv format. Each line of this file should contain 3 comma-separated numbers specifying the rotation axis for the corresponding particle in tomogram x,y, and z coordiates.
fnAxesOut
The name to which the modifed rotation axes will be written.
fnMOTL1
The name of the initial motive list (typically generated by stalkInit or spikeInit).
fnMOTL2
The name of the 2nd, "improved" motive list. For example, when doing and initial spike alignment by running seedSpikes and spikeInit followed by an alignment search with flgNoReferenceRefinement = 1, fnMOTL2 would be the output motive list found by that search. The number of lines in the fnMOTL1 and fnMOTL2 must match that in fnAxesIn.
 

AUTHOR

John Heumann  

SEE ALSO

PEET(1), spikeInit(1), stalkInit(1).


 

Index

NAME
SYNOPSIS
DESCRIPTION
AUTHOR
SEE ALSO

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Time: 21:10:05 GMT, March 20, 2017