Index Return to Main Contents

modifyMotiveList inFile outFile rotation translation

modifyMotiveList inFile outFile rotation translation flgInvert

modifyMotiveList inFile outFile rotation translation flgInvert flgEuler

**inFile**- The file name of the input motive list in csv format.
**outFile**- The name to which the output file will be written. Previous contents will be overwritten and lost if the file already exists.
**rotation**-
A string which can be evaluated as a Matlab vector specifying
3 floating point IMOD Slicer angles in degrees, e.g. "xAngle,yAngle,zAngle",
where xAngle, yAngle, and zAngle specify rotations about corresponding
tomogram axes, to be applied in the order Z-Y-X . The composite rotation
can be thought of as applied to either a) the implied reference particle,
or b) the resulting average prior to any "align particles to have their Y
axes vertical" (flgAlignAverages) operation. Conversely, the volumes containing
the individual particles can be thought of as rotating in the opposite direction. If
**flgEuler**is true (see below), the angles specified will be interpreted as Z-X-Z Euler angles rather than Slicer angles. **translation (optional)**- A string which can be evaluated as a Matlab vector specifying floating point X, Y, and Z translations in tomogram pixels, e.g. "xShift,yShift,zShift" (default = "0,0,0"). The resulting shift can be thought of as applying directly to either a) the implied reference, or b) the resulting average after any rotation specified, but prior to any optional vertical alignment. Alternatively, the volumes containing the individual particles can be thought of as shifting in the opposite direction.
**flgInvert (optional, default = 0)**-
If non-zero, perform the inverse of the usual transformation. Given a
motive list a.csv, for example, the commands

modifyMotiveList a.csv b.csv '131, -37, 28' '2, -3, 5'

modifyMotiveList b.csv c.csv '131, -37, 28' '2, -3, 5' 1would result in c.csv being equivalent to a.csv, except for round-off errors.

**flgEuler (optional, default = 0)**- If non-zero, interpret the input angles as Z-X-Z Euler angles (entered in the order "Z1,X,Z2") rather than Z-Y-X Slicer angles.

- NAME
- SYNOPSIS
- DESCRIPTION
- AUTHOR
- SEE ALSO

This document was created by man2html, using the manual pages.

Time: 21:10:05 GMT, March 20, 2017