Content-type: text/html Manpage of createRotAxesFiles

createRotAxesFiles

Section: User Commands (1)
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NAME

createRotAxesFiles - generate explicit rotation axes files  

SYNOPSIS

createRotAxesFiles prmFile  

DESCRIPTION

Programs like spikeInit and stalkInit generate explicit rotation axes files, which are then used during PEET alignment. Users can also supply manually generated files by specifying yaxisType 3 (User supplied csv files). In other cases, however, e.g. when using yaxisTypes 0-2 (Tomogram Y axis, Particle model points, or End points of contour, respectively), the particle Y axes will be implicit. In these cases, createRotAxesFiles can be used to generate csv files named fnOutput_Tom<N>_RotAxes.csv containing the per-particle rotation axes. After alignment, createAlignedModel can then be used to generate refined estimates of per particle rotation axes if desired.

CreateRotAxes will refuse to write (or overwrite) rotation axes files if yaxisType is 3, indicating that such files should already be present either in the project or tomogram directories.

prmFile
The file name of the parameter file. See the PEET and alignSubset man pages for descriptions of applicable parameter file settings. Settings should be those which have or will be used for alignment and averaging.
 

AUTHOR

John Heumann  

SEE ALSO

PEET(1), alignSubset(1), averageAll(1), createAlignedModel(1)


 

Index

NAME
SYNOPSIS
DESCRIPTION
AUTHOR
SEE ALSO

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Time: 16:44:59 GMT, March 05, 2018