SerialEMLibs is a repository for libraries used by SerialEM and SerialEMCCD.
It should be located in a folder adjacent to the folders for those projects.

See the Copyright.txt in SerialEM and ReadMe.txt in SerialEMCCD for
descriptions of various license terms.

See the file libimod/README-VIS.STUDIO.txt in the IMOD source package for
descriptions of how the IMOD libraries here are built in Visual Studio.  See
the file ReadMe.txt in the SerialEM source for instructions on modifying the
configurations there to use some of the alternative libraries here.

The libctffind files here are a bit different from other variations:
libctffind.lib is from a regular build of IMOD with Intel compilers.
Specifically, they are built with the 2015 Intel C++ compiler used with the
VS2013 toolset, in order to maintain compatibility with Windows XP.   A
SerialEM built with this will depend on the libctffind.dll built in IMOD
and Intel libraries libiomp5md.dll and libmmd.dll, all distributed with
SerialEM.  A 32-build will also depend on msvrc120.dll and msvc120.dll.
The libctffind-VCOMP.dll and libctffind-VCOMP.lib are built with
Visual Studio against vcomp.lib instead of libiomp5md.lib; SerialEM built with
libctffind-VCOMP.lib will depend only on the libctffind-VCOMP.dll included
here.

Here is a table of what libraries are used in what builds.  v90 and v140 refer
to the toolsets installed by VS2008 and VS2015, respectively.  Higher versions
of Visual Studio offer a selection of toolsets if earlier versions are
installed.

The current building procedure when a library needs updating in either
SerialEM or SerialEMCCD is as follows.  If libcfshr or libiimod needs updating
in SerialEMCCD, open libimod/libimod.sln in VS2008, build Release x64 for
whichever needs updating, and copy the resulting lib's to here.  Then open
libimod/libimod14.sln in VS2015, and build Intel-OMP Win32 and x64 for
libcfshr, libiimod, and/or libimod, and copy the libcfshr-I*.lib,
libiimod-I*.lib, and/or libimod-I*.lib to here.  (These builds require
environment variables IOMP_LIB32_DIR and IOMP_LIB64_DIR with the paths to
32-bit and 64-bit libiomp5md.lib, respectively.)  Then build Release Win32
and Win64 for libcfshr, libiimod and/or libimod, and DLL-Release x64 and
IOMP-noHDF for the noHDF versions of libiimod if that needs updating for
SerialEMCCD. Copy libcfshr-[^I]*.lib, libiimod-[^I]*.lib, and/or
libimod-[^I]*.lib to here.

libifft-MKL is built in VS2015 against static MKL libraries in the Intel 2015
compilers, using the Intel-OMP Win32 and x64 configurations.  These
configurations rely on the environment variable ICPP_COMPILER15, which is
defined by the Intel install.  This is used in the C/C++ - General section and
the Linker - Input section.

                        SerialEM with MKL  Intel-free SerialEM  SerialEMCCD
                          32-bit 64-bit       32-bit 64-bit      v90  v140
hdf5-14.lib                  X                   X 
hdf5-14-64.lib                     X                   X

libcfshr-64.lib                                                   X
libcfshr-14.lib                                  X
libcfshr-14-64.lib                                     X                X
libcfshr-IOMP.lib            X
libcfshr-IOMP-64.lib               X                                    X

libctffind.lib               X
libctffind-VCOMP.dll                             X
libctffind-VCOMP-14.lib                          X
x64/libctffind.lib                 X
x64/libctffind-VCOMP.dll                               X
x64/libctffind-VCOMP-14.lib                            X

libifft-64.lib                                                    X  
libifft-14.lib                                   X
libifft-14-64.lib                                      X                X 
libifft-MKL.lib              X
libifft-MKL-64.lib                 X

libiimod-64.lib                                                   X
libiimod-14.lib                                  X
libiimod-14-64.lib                                     X         
libiimod-noHDF-14-64.lib                                                X
libiimod-IOMP-noHDF-64.lib                                              X
libiimod-IOMP.lib            X
libiimod-IOMP-64.lib               X

libimod.lib                                      X
libimod-64.lib                                         X
libimod-IOMP.lib             X
libimod-IOMP-64.lib                X

libimxml-64.lib                                                   X
libimxml-14.lib              X                   X
libimxml-14-64.lib                 X                   X                X

libiomp5md.lib               X
x64/libiomp5md.lib                 X

libjpeg-64.lib                                                    X
libjpeg-14.lib               X                   X
libjpeg-14-64.lib                  X                   X                X

libtiff-64.lib                                                    X
libtiff-14.lib               X                   X
libtiff-14-64.lib                  X                   X                X

zlib.lib                     X                   X                X
zlib-64.lib                        X                   X                X