Starting checkAlignmentLogs ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. **************************************************************************** Out of 132 particles: The best angle was found at the end of the search range for: phi 0 ( 0.0%) theta 0 ( 0.0%) psi 0 ( 0.0%) any angle 1 ( 0.8%) The best shift was found at the end of the search range for: X 0 ( 0.0%) Y 0 ( 0.0%) Z 0 ( 0.0%) any shift 0 ( 0.0%) **************************************************************************** Starting mergeEM_mce ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. Starting averageAll_mce ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. Parameter file: bpv.prm Reference is the 93th particle of tom 1 szVol: 52 52 52 fnOutput: bpv dPhi is from -3.00 to 3.00 degrees dTheta is from -3.00 to 3.00 degrees dPsi is from -3.00 to 3.00 degrees searchRadius is x:2 y:2 z:2 voxels lowCutoff is 0.00 0.05 highCutoff is 0.15 0.05 CCMode: 1 refThreshold: 40 edgeShift 1 flgWedgeWeight 1 nWeightGroup 8 lstThresholds: 61 alignedBaseName debugLevsel: 3 flgAlignAverages: 0 selectClassID: [ 1 ] Group 1 median CCC = 0.371601, count = 15 Group 2 median CCC = 0.372388, count = 18 Group 3 median CCC = 0.372868, count = 18 Group 4 median CCC = 0.373028, count = 18 Group 5 median CCC = 0.373269, count = 18 Group 6 median CCC = 0.371883, count = 16 Group 7 median CCC = 0.353541, count = 16 Group 8 median CCC = 0.375354, count = 13 Correct particle 1 CCC from 0.349271 to 0.347964 Correct particle 2 CCC from 0.363259 to 0.3619 Correct particle 3 CCC from 0.403228 to 0.400486 Correct particle 4 CCC from 0.360116 to 0.358282 Correct particle 5 CCC from 0.38415 to 0.383003 Correct particle 6 CCC from 0.373877 to 0.391802 Correct particle 7 CCC from 0.329698 to 0.327456 Correct particle 8 CCC from 0.360543 to 0.359467 Correct particle 9 CCC from 0.395396 to 0.393382 Correct particle 10 CCC from 0.345006 to 0.343715 Correct particle 11 CCC from 0.387044 to 0.384577 Correct particle 12 CCC from 0.350393 to 0.347786 Correct particle 13 CCC from 0.404886 to 0.402824 Correct particle 14 CCC from 0.336073 to 0.334816 Correct particle 15 CCC from 0.351383 to 0.350334 Correct particle 16 CCC from 0.370561 to 0.365761 Correct particle 17 CCC from 0.366133 to 0.363409 Correct particle 18 CCC from 0.354044 to 0.352987 Correct particle 19 CCC from 0.35698 to 0.354324 Correct particle 20 CCC from 0.385866 to 0.383901 Correct particle 21 CCC from 0.279054 to 0.292433 Correct particle 22 CCC from 0.352554 to 0.350156 Correct particle 23 CCC from 0.39953 to 0.396558 Correct particle 24 CCC from 0.373703 to 0.372305 Correct particle 25 CCC from 0.375014 to 0.373894 Correct particle 26 CCC from 0.278596 to 0.277177 Correct particle 27 CCC from 0.35218 to 0.350386 Correct particle 28 CCC from 0.2538 to 0.250512 Correct particle 29 CCC from 0.397576 to 0.396088 Correct particle 30 CCC from 0.228177 to 0.226625 Correct particle 31 CCC from 0.407599 to 0.405523 Correct particle 32 CCC from 0.367525 to 0.365025 Correct particle 33 CCC from 0.272493 to 0.285557 Correct particle 34 CCC from 0.395434 to 0.414393 Correct particle 35 CCC from 0.382577 to 0.379975 Correct particle 36 CCC from 0.345084 to 0.343327 Correct particle 37 CCC from 0.372876 to 0.370977 Correct particle 38 CCC from 0.284336 to 0.282524 Correct particle 39 CCC from 0.264942 to 0.263593 Correct particle 40 CCC from 0.369672 to 0.367158 Correct particle 41 CCC from 0.202166 to 0.200791 Correct particle 42 CCC from 0.33484 to 0.350893 Correct particle 43 CCC from 0.408842 to 0.4058 Correct particle 44 CCC from 0.340998 to 0.33998 Correct particle 45 CCC from 0.375764 to 0.370896 Correct particle 46 CCC from 0.372705 to 0.371592 Correct particle 47 CCC from 0.357064 to 0.352438 Correct particle 48 CCC from 0.166238 to 0.174208 Correct particle 49 CCC from 0.402715 to 0.400664 Correct particle 50 CCC from 0.403182 to 0.401978 Correct particle 51 CCC from 0.353832 to 0.349248 Correct particle 52 CCC from 0.369013 to 0.367632 Correct particle 53 CCC from 0.37443 to 0.372044 Correct particle 54 CCC from 0.257535 to 0.255894 Correct particle 55 CCC from 0.406011 to 0.40325 Correct particle 56 CCC from 0.383681 to 0.381236 Correct particle 57 CCC from 0.424293 to 0.423026 Correct particle 58 CCC from 0.377836 to 0.375912 Correct particle 59 CCC from 0.408956 to 0.403658 Correct particle 60 CCC from 0.390814 to 0.385751 Correct particle 61 CCC from 0.365634 to 0.363772 Correct particle 62 CCC from 0.262265 to 0.274839 Correct particle 63 CCC from 0.29908 to 0.313419 Correct particle 64 CCC from 0.357189 to 0.354532 Correct particle 65 CCC from 0.375513 to 0.372719 Correct particle 66 CCC from 0.378447 to 0.375632 Correct particle 67 CCC from 0.321236 to 0.319189 Correct particle 68 CCC from 0.387222 to 0.384589 Correct particle 69 CCC from 0.386493 to 0.381486 Correct particle 70 CCC from 0.385695 to 0.383072 Correct particle 71 CCC from 0.418266 to 0.417017 Correct particle 72 CCC from 0.396579 to 0.393882 Correct particle 73 CCC from 0.407969 to 0.406443 Correct particle 74 CCC from 0.39981 to 0.397262 Correct particle 75 CCC from 0.2963 to 0.294791 Correct particle 76 CCC from 0.374991 to 0.372201 Correct particle 77 CCC from 0.400873 to 0.398147 Correct particle 78 CCC from 0.342934 to 0.341188 Correct particle 79 CCC from 0.382118 to 0.380688 Correct particle 80 CCC from 0.381167 to 0.378738 Correct particle 81 CCC from 0.375354 to 0.370492 Correct particle 82 CCC from 0.372501 to 0.371107 Correct particle 83 CCC from 0.356271 to 0.353848 Correct particle 84 CCC from 0.36075 to 0.358451 Correct particle 85 CCC from 0.390703 to 0.387796 Correct particle 86 CCC from 0.380665 to 0.398915 Correct particle 87 CCC from 0.379394 to 0.377974 Correct particle 88 CCC from 0.355603 to 0.354541 Correct particle 89 CCC from 0.37662 to 0.37422 Correct particle 90 CCC from 0.375904 to 0.37399 Correct particle 91 CCC from 0.344834 to 0.342636 Correct particle 92 CCC from 0.374044 to 0.37166 Correct particle 93 CCC from 0.41431 to 0.411228 Correct particle 94 CCC from 0.372859 to 0.370085 Correct particle 95 CCC from 0.402514 to 0.400464 Correct particle 96 CCC from 0.300309 to 0.296419 Correct particle 97 CCC from 0.403496 to 0.398269 Correct particle 98 CCC from 0.363638 to 0.36132 Correct particle 99 CCC from 0.419424 to 0.439533 Correct particle 100 CCC from 0.378234 to 0.375823 Correct particle 101 CCC from 0.394253 to 0.39174 Correct particle 102 CCC from 0.373678 to 0.370898 Correct particle 103 CCC from 0.389242 to 0.387786 Correct particle 104 CCC from 0.374872 to 0.392845 Correct particle 105 CCC from 0.361805 to 0.357118 Correct particle 106 CCC from 0.341083 to 0.340065 Correct particle 107 CCC from 0.319715 to 0.317677 Correct particle 108 CCC from 0.340301 to 0.337769 Correct particle 109 CCC from 0.351139 to 0.349825 Correct particle 110 CCC from 0.3719 to 0.370006 Correct particle 111 CCC from 0.358245 to 0.355962 Correct particle 112 CCC from 0.357017 to 0.374134 Correct particle 113 CCC from 0.402836 to 0.400096 Correct particle 114 CCC from 0.370752 to 0.369645 Correct particle 115 CCC from 0.347247 to 0.363895 Correct particle 116 CCC from 0.387025 to 0.384146 Correct particle 117 CCC from 0.371265 to 0.369876 Correct particle 118 CCC from 0.346999 to 0.345701 Correct particle 119 CCC from 0.35365 to 0.351245 Correct particle 120 CCC from 0.371692 to 0.369323 Correct particle 121 CCC from 0.324836 to 0.322627 Correct particle 122 CCC from 0.337436 to 0.334926 Correct particle 123 CCC from 0.408346 to 0.427924 Correct particle 124 CCC from 0.388884 to 0.387723 Correct particle 125 CCC from 0.372075 to 0.369307 Correct particle 126 CCC from 0.378722 to 0.377305 Correct particle 127 CCC from 0.376385 to 0.373825 Correct particle 128 CCC from 0.350066 to 0.366849 Correct particle 129 CCC from 0.385083 to 0.403545 Correct particle 130 CCC from 0.371601 to 0.370492 Correct particle 131 CCC from 0.380253 to 0.375327 Correct particle 132 CCC from 0.32735 to 0.324915 Group medians adjusted to 0.370492 Group 1 original median = 0.371601 Group 2 original median = 0.372388 Group 3 original median = 0.372868 Group 4 original median = 0.373028 Group 5 original median = 0.373269 Group 6 original median = 0.371883 Group 7 original median = 0.353541 Group 8 original median = 0.375354 Reference rotation axis estimated as 0.0218099 0.999198 -0.0335837 Generating the reference volume for iteration 5 Particle 3 tomNum 1 ModelIndex 3 included CCC=0.4005 phi -141.1010 theta 166.7340 psi 144.0850 dx -0.1500 dy -2.5000 dz -1.7000 Extracting a particle size of 138 140 132 WARNING: Z axis minimum index out of range by 31 voxels! Particle 5 tomNum 1 ModelIndex 5 included CCC=0.3830 phi -156.7420 theta 78.0895 psi -92.8677 dx 2.6000 dy -0.4000 dz -4.3000 Extracting a particle size of 124 138 152 WARNING: Z axis minimum index out of range by 43 voxels! Particle 9 tomNum 1 ModelIndex 9 included CCC=0.3934 phi -123.1730 theta 37.0748 psi 82.0941 dx 0.8000 dy 0.3500 dz -2.1000 Extracting a particle size of 176 152 166 WARNING: Z axis minimum index out of range by 43 voxels! Particle 11 tomNum 1 ModelIndex 11 included CCC=0.3846 phi -132.9610 theta 166.4760 psi -95.3276 dx 2.0500 dy -1.2000 dz -1.8000 Extracting a particle size of 162 144 132 WARNING: Z axis minimum index out of range by 27 voxels! Particle 13 tomNum 1 ModelIndex 13 included CCC=0.4028 phi -112.7950 theta 13.7573 psi 62.2686 dx 3.1000 dy -0.0500 dz -0.4000 Extracting a particle size of 162 154 130 WARNING: Z axis minimum index out of range by 29 voxels! Particle 23 tomNum 1 ModelIndex 23 included CCC=0.3966 phi 106.6470 theta 43.5741 psi -27.0753 dx -1.0000 dy 1.0500 dz 2.2500 Extracting a particle size of 134 164 160 WARNING: Z axis minimum index out of range by 31 voxels! Particle 25 tomNum 1 ModelIndex 25 included CCC=0.3739 phi -91.4096 theta 71.8377 psi -77.0949 dx 0.5500 dy -2.0500 dz 0.3500 Extracting a particle size of 148 126 130 WARNING: Z axis minimum index out of range by 22 voxels! Particle 29 tomNum 1 ModelIndex 29 included CCC=0.3961 phi 155.3800 theta 89.0134 psi 131.1010 dx 2.2000 dy 0.2500 dz -2.1500 Extracting a particle size of 166 168 136 WARNING: Z axis minimum index out of range by 38 voxels! Particle 31 tomNum 1 ModelIndex 31 included CCC=0.4055 phi -148.6230 theta 34.9715 psi 174.1340 dx 0.4500 dy 2.8500 dz -2.7500 Extracting a particle size of 142 168 164 WARNING: Z axis minimum index out of range by 51 voxels! Particle 35 tomNum 1 ModelIndex 35 included CCC=0.3800 phi -23.6181 theta 159.8120 psi 127.4840 dx -1.3500 dy 1.6500 dz -0.6000 Extracting a particle size of 160 158 142 WARNING: Z axis minimum index out of range by 34 voxels! Particle 37 tomNum 1 ModelIndex 37 included CCC=0.3710 phi -110.5030 theta 49.7795 psi 148.7130 dx -0.6500 dy 0.6000 dz -1.7500 Extracting a particle size of 172 170 166 WARNING: Z axis minimum index out of range by 42 voxels! Particle 43 tomNum 1 ModelIndex 43 included CCC=0.4058 phi 8.4013 theta 89.8876 psi -109.7340 dx -0.1000 dy 0.6000 dz 4.3500 Extracting a particle size of 134 142 116 WARNING: Z axis minimum index out of range by 5 voxels! Particle 45 tomNum 1 ModelIndex 45 included CCC=0.3709 phi 129.4450 theta 99.3464 psi 43.0000 dx -0.1500 dy -1.9000 dz 2.4000 Extracting a particle size of 172 172 158 WARNING: Z axis minimum index out of range by 32 voxels! Particle 49 tomNum 1 ModelIndex 49 included CCC=0.4007 phi -138.7790 theta 44.6379 psi 87.1852 dx -0.1500 dy -1.2000 dz -1.2000 Extracting a particle size of 172 146 174 WARNING: Z axis minimum index out of range by 36 voxels! WARNING: Z axis maximum index out of range by 2 voxels! Particle 53 tomNum 1 ModelIndex 53 included CCC=0.3720 phi -5.8615 theta 92.1012 psi -44.7740 dx 2.7000 dy -1.6500 dz 1.7000 Extracting a particle size of 148 154 116 Particle 55 tomNum 1 ModelIndex 55 included CCC=0.4032 phi -6.2238 theta 132.7330 psi 90.7603 dx 0.6000 dy 0.8500 dz 1.2000 Extracting a particle size of 152 114 152 WARNING: Z axis minimum index out of range by 22 voxels! Particle 57 tomNum 1 ModelIndex 57 included CCC=0.4230 phi -164.9320 theta 46.5487 psi -73.5439 dx 0.0000 dy -1.7500 dz 0.6500 Extracting a particle size of 174 154 160 WARNING: Z axis minimum index out of range by 25 voxels! Particle 59 tomNum 1 ModelIndex 59 included CCC=0.4037 phi 46.7606 theta 117.0580 psi 173.3190 dx 0.5500 dy 0.6000 dz -0.3500 Extracting a particle size of 154 154 174 WARNING: Z axis minimum index out of range by 27 voxels! WARNING: Z axis maximum index out of range by 11 voxels! Particle 65 tomNum 1 ModelIndex 65 included CCC=0.3727 phi 176.8350 theta 35.4005 psi -43.7413 dx -1.1500 dy 0.9000 dz 0.0000 Extracting a particle size of 172 172 144 WARNING: Z axis minimum index out of range by 8 voxels! Particle 69 tomNum 1 ModelIndex 69 included CCC=0.3815 phi 171.5620 theta 129.6140 psi 128.1180 dx 1.2500 dy -1.0000 dz -1.4500 Extracting a particle size of 172 172 154 WARNING: Z axis minimum index out of range by 22 voxels! Particle 71 tomNum 1 ModelIndex 71 included CCC=0.4170 phi -136.5110 theta 39.8158 psi -104.0540 dx -0.8500 dy -1.9500 dz -1.2500 Extracting a particle size of 170 154 170 WARNING: Z axis minimum index out of range by 32 voxels! WARNING: Z axis maximum index out of range by 2 voxels! Particle 73 tomNum 1 ModelIndex 73 included CCC=0.4064 phi 44.1286 theta 43.9032 psi 175.6600 dx -0.0500 dy -2.0000 dz 1.6500 Extracting a particle size of 148 174 172 WARNING: Z axis minimum index out of range by 29 voxels! WARNING: Z axis maximum index out of range by 7 voxels! Particle 77 tomNum 1 ModelIndex 77 included CCC=0.3981 phi -152.4330 theta 128.7840 psi 150.9570 dx 1.3000 dy -1.3500 dz -0.4500 Extracting a particle size of 172 166 170 WARNING: Z axis minimum index out of range by 22 voxels! WARNING: Z axis maximum index out of range by 12 voxels! Particle 79 tomNum 1 ModelIndex 79 included CCC=0.3807 phi 33.1501 theta 73.5258 psi 22.4621 dx -0.7500 dy -0.1000 dz 1.5000 Extracting a particle size of 170 138 164 WARNING: Z axis minimum index out of range by 18 voxels! WARNING: Z axis maximum index out of range by 10 voxels! Particle 81 tomNum 1 ModelIndex 81 included CCC=0.3705 phi 26.5053 theta 122.0510 psi 156.3980 dx 2.2000 dy 0.4000 dz -0.6000 Extracting a particle size of 170 164 170 WARNING: Z axis minimum index out of range by 22 voxels! WARNING: Z axis maximum index out of range by 12 voxels! Particle 85 tomNum 1 ModelIndex 85 included CCC=0.3878 phi 90.2131 theta 15.7257 psi -159.5250 dx 1.3500 dy 0.6000 dz 0.6000 Extracting a particle size of 140 154 126 Particle 87 tomNum 1 ModelIndex 87 included CCC=0.3780 phi 93.5711 theta 34.2647 psi 127.9890 dx 0.4500 dy -1.1000 dz 2.4500 Extracting a particle size of 174 168 144 WARNING: Z axis minimum index out of range by 12 voxels! Particle 89 tomNum 1 ModelIndex 89 included CCC=0.3742 phi -115.7780 theta 131.2740 psi -133.7280 dx -1.3500 dy -2.2500 dz 0.0000 Extracting a particle size of 172 148 168 WARNING: Z axis minimum index out of range by 25 voxels! WARNING: Z axis maximum index out of range by 7 voxels! Particle 93 tomNum 1 ModelIndex 93 included CCC=0.4112 phi 73.8831 theta 0.8865 psi -73.5850 dx -0.0500 dy 0.0000 dz 0.0000 Extracting a particle size of 104 102 104 Particle 95 tomNum 1 ModelIndex 95 included CCC=0.4005 phi -32.9059 theta 35.7388 psi 79.9456 dx -0.0500 dy 1.9500 dz 1.0000 Extracting a particle size of 176 154 164 WARNING: Z axis minimum index out of range by 26 voxels! WARNING: Z axis maximum index out of range by 2 voxels! Particle 97 tomNum 1 ModelIndex 97 included CCC=0.3983 phi 8.6209 theta 125.8720 psi 5.9105 dx 2.3000 dy -0.6000 dz -1.9000 Extracting a particle size of 118 144 154 WARNING: Z axis minimum index out of range by 23 voxels! Particle 99 tomNum 1 ModelIndex 99 included CCC=0.4395 phi 72.1169 theta 160.0930 psi -31.3005 dx -1.0000 dy 0.2000 dz -2.3500 Extracting a particle size of 136 148 140 WARNING: Z axis minimum index out of range by 11 voxels! Particle 101 tomNum 1 ModelIndex 101 included CCC=0.3917 phi -15.0396 theta 175.1510 psi -136.2780 dx -0.6000 dy 0.2000 dz -0.4000 Extracting a particle size of 146 146 112 WARNING: Z axis minimum index out of range by 2 voxels! Particle 103 tomNum 1 ModelIndex 103 included CCC=0.3878 phi 165.0790 theta 81.1423 psi 122.9320 dx 0.6000 dy 0.7000 dz 1.0500 Extracting a particle size of 162 154 138 WARNING: Z axis minimum index out of range by 9 voxels! Particle 113 tomNum 1 ModelIndex 113 included CCC=0.4001 phi -61.5220 theta 170.1940 psi 76.6670 dx -0.6000 dy 1.4000 dz 0.7500 Extracting a particle size of 158 148 124 WARNING: Z axis minimum index out of range by 5 voxels! Particle 117 tomNum 1 ModelIndex 117 included CCC=0.3699 phi 25.9635 theta 54.8217 psi 122.4870 dx -1.3500 dy 0.5000 dz 2.9500 Extracting a particle size of 162 174 170 WARNING: Z axis minimum index out of range by 25 voxels! WARNING: Z axis maximum index out of range by 9 voxels! Particle 123 tomNum 1 ModelIndex 123 included CCC=0.4279 phi 179.0360 theta 162.3410 psi -34.7550 dx 0.7500 dy 0.0000 dz -1.4500 Extracting a particle size of 156 162 128 WARNING: X axis minimum index out of range by 37 voxels! WARNING: Z axis minimum index out of range by 11 voxels! Particle 127 tomNum 1 ModelIndex 127 included CCC=0.3738 phi -13.4282 theta 139.3600 psi 54.0846 dx 1.6500 dy -0.4000 dz 2.2000 Extracting a particle size of 172 154 156 WARNING: X axis minimum index out of range by 33 voxels! WARNING: Z axis minimum index out of range by 19 voxels! WARNING: Z axis maximum index out of range by 1 voxels! Particle 129 tomNum 1 ModelIndex 129 included CCC=0.4035 phi 56.0218 theta 100.7720 psi -119.8060 dx 2.4500 dy 0.1500 dz 2.1500 Extracting a particle size of 162 170 158 WARNING: X axis minimum index out of range by 4 voxels! WARNING: Z axis minimum index out of range by 17 voxels! WARNING: Z axis maximum index out of range by 5 voxels! Particle 131 tomNum 1 ModelIndex 131 included CCC=0.3753 phi 31.7960 theta 92.3104 psi 136.0450 dx 1.7500 dy -0.8000 dz 2.9500 Extracting a particle size of 172 170 144 WARNING: X axis minimum index out of range by 6 voxels! WARNING: Y axis minimum index out of range by 16 voxels! WARNING: Z axis minimum index out of range by 9 voxels! 40 particles from Tom 1 have been added to the reference Generating averages from iteration 4 Group 1 median CCC = 0.371601, count = 15 Group 2 median CCC = 0.372388, count = 18 Group 3 median CCC = 0.372868, count = 18 Group 4 median CCC = 0.373028, count = 18 Group 5 median CCC = 0.373269, count = 18 Group 6 median CCC = 0.371883, count = 16 Group 7 median CCC = 0.353541, count = 16 Group 8 median CCC = 0.375354, count = 13 Correct particle 1 CCC from 0.349271 to 0.347964 Correct particle 2 CCC from 0.363259 to 0.3619 Correct particle 3 CCC from 0.403228 to 0.400486 Correct particle 4 CCC from 0.360116 to 0.358282 Correct particle 5 CCC from 0.38415 to 0.383003 Correct particle 6 CCC from 0.373877 to 0.391802 Correct particle 7 CCC from 0.329698 to 0.327456 Correct particle 8 CCC from 0.360543 to 0.359467 Correct particle 9 CCC from 0.395396 to 0.393382 Correct particle 10 CCC from 0.345006 to 0.343715 Correct particle 11 CCC from 0.387044 to 0.384577 Correct particle 12 CCC from 0.350393 to 0.347786 Correct particle 13 CCC from 0.404886 to 0.402824 Correct particle 14 CCC from 0.336073 to 0.334816 Correct particle 15 CCC from 0.351383 to 0.350334 Correct particle 16 CCC from 0.370561 to 0.365761 Correct particle 17 CCC from 0.366133 to 0.363409 Correct particle 18 CCC from 0.354044 to 0.352987 Correct particle 19 CCC from 0.35698 to 0.354324 Correct particle 20 CCC from 0.385866 to 0.383901 Correct particle 21 CCC from 0.279054 to 0.292433 Correct particle 22 CCC from 0.352554 to 0.350156 Correct particle 23 CCC from 0.39953 to 0.396558 Correct particle 24 CCC from 0.373703 to 0.372305 Correct particle 25 CCC from 0.375014 to 0.373894 Correct particle 26 CCC from 0.278596 to 0.277177 Correct particle 27 CCC from 0.35218 to 0.350386 Correct particle 28 CCC from 0.2538 to 0.250512 Correct particle 29 CCC from 0.397576 to 0.396088 Correct particle 30 CCC from 0.228177 to 0.226625 Correct particle 31 CCC from 0.407599 to 0.405523 Correct particle 32 CCC from 0.367525 to 0.365025 Correct particle 33 CCC from 0.272493 to 0.285557 Correct particle 34 CCC from 0.395434 to 0.414393 Correct particle 35 CCC from 0.382577 to 0.379975 Correct particle 36 CCC from 0.345084 to 0.343327 Correct particle 37 CCC from 0.372876 to 0.370977 Correct particle 38 CCC from 0.284336 to 0.282524 Correct particle 39 CCC from 0.264942 to 0.263593 Correct particle 40 CCC from 0.369672 to 0.367158 Correct particle 41 CCC from 0.202166 to 0.200791 Correct particle 42 CCC from 0.33484 to 0.350893 Correct particle 43 CCC from 0.408842 to 0.4058 Correct particle 44 CCC from 0.340998 to 0.33998 Correct particle 45 CCC from 0.375764 to 0.370896 Correct particle 46 CCC from 0.372705 to 0.371592 Correct particle 47 CCC from 0.357064 to 0.352438 Correct particle 48 CCC from 0.166238 to 0.174208 Correct particle 49 CCC from 0.402715 to 0.400664 Correct particle 50 CCC from 0.403182 to 0.401978 Correct particle 51 CCC from 0.353832 to 0.349248 Correct particle 52 CCC from 0.369013 to 0.367632 Correct particle 53 CCC from 0.37443 to 0.372044 Correct particle 54 CCC from 0.257535 to 0.255894 Correct particle 55 CCC from 0.406011 to 0.40325 Correct particle 56 CCC from 0.383681 to 0.381236 Correct particle 57 CCC from 0.424293 to 0.423026 Correct particle 58 CCC from 0.377836 to 0.375912 Correct particle 59 CCC from 0.408956 to 0.403658 Correct particle 60 CCC from 0.390814 to 0.385751 Correct particle 61 CCC from 0.365634 to 0.363772 Correct particle 62 CCC from 0.262265 to 0.274839 Correct particle 63 CCC from 0.29908 to 0.313419 Correct particle 64 CCC from 0.357189 to 0.354532 Correct particle 65 CCC from 0.375513 to 0.372719 Correct particle 66 CCC from 0.378447 to 0.375632 Correct particle 67 CCC from 0.321236 to 0.319189 Correct particle 68 CCC from 0.387222 to 0.384589 Correct particle 69 CCC from 0.386493 to 0.381486 Correct particle 70 CCC from 0.385695 to 0.383072 Correct particle 71 CCC from 0.418266 to 0.417017 Correct particle 72 CCC from 0.396579 to 0.393882 Correct particle 73 CCC from 0.407969 to 0.406443 Correct particle 74 CCC from 0.39981 to 0.397262 Correct particle 75 CCC from 0.2963 to 0.294791 Correct particle 76 CCC from 0.374991 to 0.372201 Correct particle 77 CCC from 0.400873 to 0.398147 Correct particle 78 CCC from 0.342934 to 0.341188 Correct particle 79 CCC from 0.382118 to 0.380688 Correct particle 80 CCC from 0.381167 to 0.378738 Correct particle 81 CCC from 0.375354 to 0.370492 Correct particle 82 CCC from 0.372501 to 0.371107 Correct particle 83 CCC from 0.356271 to 0.353848 Correct particle 84 CCC from 0.36075 to 0.358451 Correct particle 85 CCC from 0.390703 to 0.387796 Correct particle 86 CCC from 0.380665 to 0.398915 Correct particle 87 CCC from 0.379394 to 0.377974 Correct particle 88 CCC from 0.355603 to 0.354541 Correct particle 89 CCC from 0.37662 to 0.37422 Correct particle 90 CCC from 0.375904 to 0.37399 Correct particle 91 CCC from 0.344834 to 0.342636 Correct particle 92 CCC from 0.374044 to 0.37166 Correct particle 93 CCC from 0.41431 to 0.411228 Correct particle 94 CCC from 0.372859 to 0.370085 Correct particle 95 CCC from 0.402514 to 0.400464 Correct particle 96 CCC from 0.300309 to 0.296419 Correct particle 97 CCC from 0.403496 to 0.398269 Correct particle 98 CCC from 0.363638 to 0.36132 Correct particle 99 CCC from 0.419424 to 0.439533 Correct particle 100 CCC from 0.378234 to 0.375823 Correct particle 101 CCC from 0.394253 to 0.39174 Correct particle 102 CCC from 0.373678 to 0.370898 Correct particle 103 CCC from 0.389242 to 0.387786 Correct particle 104 CCC from 0.374872 to 0.392845 Correct particle 105 CCC from 0.361805 to 0.357118 Correct particle 106 CCC from 0.341083 to 0.340065 Correct particle 107 CCC from 0.319715 to 0.317677 Correct particle 108 CCC from 0.340301 to 0.337769 Correct particle 109 CCC from 0.351139 to 0.349825 Correct particle 110 CCC from 0.3719 to 0.370006 Correct particle 111 CCC from 0.358245 to 0.355962 Correct particle 112 CCC from 0.357017 to 0.374134 Correct particle 113 CCC from 0.402836 to 0.400096 Correct particle 114 CCC from 0.370752 to 0.369645 Correct particle 115 CCC from 0.347247 to 0.363895 Correct particle 116 CCC from 0.387025 to 0.384146 Correct particle 117 CCC from 0.371265 to 0.369876 Correct particle 118 CCC from 0.346999 to 0.345701 Correct particle 119 CCC from 0.35365 to 0.351245 Correct particle 120 CCC from 0.371692 to 0.369323 Correct particle 121 CCC from 0.324836 to 0.322627 Correct particle 122 CCC from 0.337436 to 0.334926 Correct particle 123 CCC from 0.408346 to 0.427924 Correct particle 124 CCC from 0.388884 to 0.387723 Correct particle 125 CCC from 0.372075 to 0.369307 Correct particle 126 CCC from 0.378722 to 0.377305 Correct particle 127 CCC from 0.376385 to 0.373825 Correct particle 128 CCC from 0.350066 to 0.366849 Correct particle 129 CCC from 0.385083 to 0.403545 Correct particle 130 CCC from 0.371601 to 0.370492 Correct particle 131 CCC from 0.380253 to 0.375327 Correct particle 132 CCC from 0.32735 to 0.324915 Group medians adjusted to 0.370492 Group 1 original median = 0.371601 Group 2 original median = 0.372388 Group 3 original median = 0.372868 Group 4 original median = 0.373028 Group 5 original median = 0.373269 Group 6 original median = 0.371883 Group 7 original median = 0.353541 Group 8 original median = 0.375354 Progressively generating a new average volume Particle 1 tomNum 1 ModelIndex 1 included CCC=0.3480 phi 66.3855 theta 60.5244 psi 35.9497 dx 0.0000 dy -0.5000 dz 2.9500 Extracting a particle size of 74 86 84 WARNING: Z axis minimum index out of range by 8 voxels! Particle 3 tomNum 1 ModelIndex 3 included CCC=0.4005 phi -141.1010 theta 166.7340 psi 144.0850 dx -0.1500 dy -2.5000 dz -1.7000 Extracting a particle size of 70 72 68 Particle 5 tomNum 1 ModelIndex 5 included CCC=0.3830 phi -156.7420 theta 78.0895 psi -92.8677 dx 2.6000 dy -0.4000 dz -4.3000 Extracting a particle size of 64 70 78 WARNING: Z axis minimum index out of range by 6 voxels! Particle 7 tomNum 1 ModelIndex 7 included CCC=0.3275 phi -42.5481 theta 126.3300 psi 125.2220 dx 1.2000 dy 2.7000 dz 1.5000 Extracting a particle size of 74 84 90 Particle 9 tomNum 1 ModelIndex 9 included CCC=0.3934 phi -123.1730 theta 37.0748 psi 82.0941 dx 0.8000 dy 0.3500 dz -2.1000 Extracting a particle size of 90 76 84 WARNING: Z axis minimum index out of range by 2 voxels! Particle 11 tomNum 1 ModelIndex 11 included CCC=0.3846 phi -132.9610 theta 166.4760 psi -95.3276 dx 2.0500 dy -1.2000 dz -1.8000 Extracting a particle size of 82 74 68 Particle 13 tomNum 1 ModelIndex 13 included CCC=0.4028 phi -112.7950 theta 13.7573 psi 62.2686 dx 3.1000 dy -0.0500 dz -0.4000 Extracting a particle size of 82 78 66 Particle 15 tomNum 1 ModelIndex 15 included CCC=0.3503 phi -78.1560 theta 71.5344 psi -86.7200 dx 0.9000 dy -2.2500 dz -0.4000 Extracting a particle size of 70 64 74 WARNING: Z axis minimum index out of range by 3 voxels! Particle 17 tomNum 1 ModelIndex 17 included CCC=0.3634 phi 36.9482 theta 69.9860 psi -9.8478 dx 0.6000 dy -1.0500 dz 1.4500 Extracting a particle size of 78 70 86 Particle 19 tomNum 1 ModelIndex 19 included CCC=0.3543 phi 147.4320 theta 55.7902 psi -159.9740 dx 2.9000 dy 0.1500 dz -1.4000 Extracting a particle size of 78 72 88 WARNING: Z axis minimum index out of range by 3 voxels! Particle 23 tomNum 1 ModelIndex 23 included CCC=0.3966 phi 106.6470 theta 43.5741 psi -27.0753 dx -1.0000 dy 1.0500 dz 2.2500 Extracting a particle size of 68 84 82 Particle 25 tomNum 1 ModelIndex 25 included CCC=0.3739 phi -91.4096 theta 71.8377 psi -77.0949 dx 0.5500 dy -2.0500 dz 0.3500 Extracting a particle size of 76 64 66 Particle 27 tomNum 1 ModelIndex 27 included CCC=0.3504 phi -29.4628 theta 78.9770 psi 127.0240 dx 0.5000 dy -0.8500 dz -2.7500 Extracting a particle size of 86 84 78 WARNING: Z axis minimum index out of range by 3 voxels! Particle 29 tomNum 1 ModelIndex 29 included CCC=0.3961 phi 155.3800 theta 89.0134 psi 131.1010 dx 2.2000 dy 0.2500 dz -2.1500 Extracting a particle size of 84 86 70 WARNING: Z axis minimum index out of range by 5 voxels! Particle 31 tomNum 1 ModelIndex 31 included CCC=0.4055 phi -148.6230 theta 34.9715 psi 174.1340 dx 0.4500 dy 2.8500 dz -2.7500 Extracting a particle size of 72 86 82 WARNING: Z axis minimum index out of range by 10 voxels! Particle 35 tomNum 1 ModelIndex 35 included CCC=0.3800 phi -23.6181 theta 159.8120 psi 127.4840 dx -1.3500 dy 1.6500 dz -0.6000 Extracting a particle size of 80 80 72 Particle 37 tomNum 1 ModelIndex 37 included CCC=0.3710 phi -110.5030 theta 49.7795 psi 148.7130 dx -0.6500 dy 0.6000 dz -1.7500 Extracting a particle size of 88 86 84 WARNING: Z axis minimum index out of range by 1 voxels! Particle 43 tomNum 1 ModelIndex 43 included CCC=0.4058 phi 8.4013 theta 89.8876 psi -109.7340 dx -0.1000 dy 0.6000 dz 4.3500 Extracting a particle size of 68 72 60 Particle 45 tomNum 1 ModelIndex 45 included CCC=0.3709 phi 129.4450 theta 99.3464 psi 43.0000 dx -0.1500 dy -1.9000 dz 2.4000 Extracting a particle size of 88 88 80 Particle 47 tomNum 1 ModelIndex 47 included CCC=0.3524 phi 92.6474 theta 117.2730 psi 37.1446 dx -0.5000 dy -0.9000 dz 1.5500 Extracting a particle size of 82 88 72 Particle 49 tomNum 1 ModelIndex 49 included CCC=0.4007 phi -138.7790 theta 44.6379 psi 87.1852 dx -0.1500 dy -1.2000 dz -1.2000 Extracting a particle size of 88 74 88 Particle 51 tomNum 1 ModelIndex 51 included CCC=0.3492 phi 86.8844 theta 153.0510 psi 130.3040 dx 1.0000 dy -0.7500 dz 0.2000 Extracting a particle size of 86 84 70 Particle 53 tomNum 1 ModelIndex 53 included CCC=0.3720 phi -5.8615 theta 92.1012 psi -44.7740 dx 2.7000 dy -1.6500 dz 1.7000 Extracting a particle size of 76 78 58 Particle 55 tomNum 1 ModelIndex 55 included CCC=0.4032 phi -6.2238 theta 132.7330 psi 90.7603 dx 0.6000 dy 0.8500 dz 1.2000 Extracting a particle size of 78 58 76 Particle 57 tomNum 1 ModelIndex 57 included CCC=0.4230 phi -164.9320 theta 46.5487 psi -73.5439 dx 0.0000 dy -1.7500 dz 0.6500 Extracting a particle size of 88 78 82 Particle 59 tomNum 1 ModelIndex 59 included CCC=0.4037 phi 46.7606 theta 117.0580 psi 173.3190 dx 0.5500 dy 0.6000 dz -0.3500 Extracting a particle size of 78 78 88 Particle 61 tomNum 1 ModelIndex 61 included CCC=0.3638 phi -99.5086 theta 47.7775 psi 86.6951 dx 0.1500 dy 0.5500 dz -1.3000 Extracting a particle size of 80 64 78 WARNING: X axis maximum index out of range by 2 voxels! Particle 63 tomNum 1 ModelIndex 63 included CCC=0.3134 phi 146.3810 theta 99.2406 psi -85.2063 dx 0.6500 dy 1.8000 dz -2.4000 Extracting a particle size of 64 76 78 Particle 65 tomNum 1 ModelIndex 65 included CCC=0.3727 phi 176.8350 theta 35.4005 psi -43.7413 dx -1.1500 dy 0.9000 dz 0.0000 Extracting a particle size of 88 88 74 Particle 67 tomNum 1 ModelIndex 67 included CCC=0.3192 phi -117.0330 theta 116.9380 psi -29.2989 dx 1.1000 dy -2.5500 dz -3.8000 Extracting a particle size of 78 84 86 Particle 69 tomNum 1 ModelIndex 69 included CCC=0.3815 phi 171.5620 theta 129.6140 psi 128.1180 dx 1.2500 dy -1.0000 dz -1.4500 Extracting a particle size of 88 88 78 Particle 71 tomNum 1 ModelIndex 71 included CCC=0.4170 phi -136.5110 theta 39.8158 psi -104.0540 dx -0.8500 dy -1.9500 dz -1.2500 Extracting a particle size of 86 78 86 Particle 73 tomNum 1 ModelIndex 73 included CCC=0.4064 phi 44.1286 theta 43.9032 psi 175.6600 dx -0.0500 dy -2.0000 dz 1.6500 Extracting a particle size of 76 88 88 Particle 77 tomNum 1 ModelIndex 77 included CCC=0.3981 phi -152.4330 theta 128.7840 psi 150.9570 dx 1.3000 dy -1.3500 dz -0.4500 Extracting a particle size of 88 84 86 Particle 79 tomNum 1 ModelIndex 79 included CCC=0.3807 phi 33.1501 theta 73.5258 psi 22.4621 dx -0.7500 dy -0.1000 dz 1.5000 Extracting a particle size of 86 70 84 Particle 81 tomNum 1 ModelIndex 81 included CCC=0.3705 phi 26.5053 theta 122.0510 psi 156.3980 dx 2.2000 dy 0.4000 dz -0.6000 Extracting a particle size of 86 84 86 Particle 83 tomNum 1 ModelIndex 83 included CCC=0.3538 phi -34.4021 theta 91.4104 psi 51.9273 dx 1.4500 dy 0.2500 dz -0.8000 Extracting a particle size of 86 88 74 Particle 85 tomNum 1 ModelIndex 85 included CCC=0.3878 phi 90.2131 theta 15.7257 psi -159.5250 dx 1.3500 dy 0.6000 dz 0.6000 Extracting a particle size of 70 78 64 Particle 87 tomNum 1 ModelIndex 87 included CCC=0.3780 phi 93.5711 theta 34.2647 psi 127.9890 dx 0.4500 dy -1.1000 dz 2.4500 Extracting a particle size of 88 86 74 Particle 89 tomNum 1 ModelIndex 89 included CCC=0.3742 phi -115.7780 theta 131.2740 psi -133.7280 dx -1.3500 dy -2.2500 dz 0.0000 Extracting a particle size of 88 76 86 Particle 91 tomNum 1 ModelIndex 91 included CCC=0.3426 phi -156.9880 theta 109.1830 psi -6.9500 dx -0.7000 dy -0.0500 dz 0.6000 Extracting a particle size of 74 74 80 Particle 93 tomNum 1 ModelIndex 93 included CCC=0.4112 phi 73.8831 theta 0.8865 psi -73.5850 dx -0.0500 dy 0.0000 dz 0.0000 Extracting a particle size of 54 52 52 Particle 95 tomNum 1 ModelIndex 95 included CCC=0.4005 phi -32.9059 theta 35.7388 psi 79.9456 dx -0.0500 dy 1.9500 dz 1.0000 Extracting a particle size of 90 78 84 Particle 97 tomNum 1 ModelIndex 97 included CCC=0.3983 phi 8.6209 theta 125.8720 psi 5.9105 dx 2.3000 dy -0.6000 dz -1.9000 Extracting a particle size of 60 74 78 Particle 99 tomNum 1 ModelIndex 99 included CCC=0.4395 phi 72.1169 theta 160.0930 psi -31.3005 dx -1.0000 dy 0.2000 dz -2.3500 Extracting a particle size of 70 76 70 Particle 101 tomNum 1 ModelIndex 101 included CCC=0.3917 phi -15.0396 theta 175.1510 psi -136.2780 dx -0.6000 dy 0.2000 dz -0.4000 Extracting a particle size of 74 74 58 Particle 103 tomNum 1 ModelIndex 103 included CCC=0.3878 phi 165.0790 theta 81.1423 psi 122.9320 dx 0.6000 dy 0.7000 dz 1.0500 Extracting a particle size of 82 78 70 Particle 105 tomNum 1 ModelIndex 105 included CCC=0.3571 phi 4.9390 theta 140.2360 psi 50.2425 dx 0.5000 dy 0.2500 dz 1.4500 Extracting a particle size of 88 88 76 WARNING: Y axis minimum index out of range by 5 voxels! Particle 107 tomNum 1 ModelIndex 107 included CCC=0.3177 phi -172.0870 theta 141.0010 psi -43.3229 dx 1.6500 dy 0.1500 dz 0.8000 Extracting a particle size of 88 86 76 Particle 109 tomNum 1 ModelIndex 109 included CCC=0.3498 phi 110.9100 theta 71.5551 psi 10.6050 dx -1.2000 dy -0.7000 dz 0.6500 Extracting a particle size of 76 74 80 Particle 111 tomNum 1 ModelIndex 111 included CCC=0.3560 phi -18.3704 theta 114.4600 psi -33.9714 dx 1.3000 dy -0.8000 dz 1.5000 Extracting a particle size of 72 86 80 Particle 113 tomNum 1 ModelIndex 113 included CCC=0.4001 phi -61.5220 theta 170.1940 psi 76.6670 dx -0.6000 dy 1.4000 dz 0.7500 Extracting a particle size of 80 74 64 Particle 115 tomNum 1 ModelIndex 115 included CCC=0.3639 phi 73.3711 theta 106.4820 psi -94.0999 dx -0.4000 dy 1.5500 dz 3.2500 Extracting a particle size of 66 68 76 Particle 117 tomNum 1 ModelIndex 117 included CCC=0.3699 phi 25.9635 theta 54.8217 psi 122.4870 dx -1.3500 dy 0.5000 dz 2.9500 Extracting a particle size of 82 88 86 Particle 119 tomNum 1 ModelIndex 119 included CCC=0.3512 phi -84.6520 theta 135.5670 psi 69.2788 dx 0.2500 dy 0.7500 dz -1.4000 Extracting a particle size of 88 78 76 Particle 121 tomNum 1 ModelIndex 121 included CCC=0.3226 phi -96.7503 theta 133.7570 psi 57.1777 dx 1.6000 dy -0.2000 dz -2.3500 Extracting a particle size of 88 80 78 Particle 123 tomNum 1 ModelIndex 123 included CCC=0.4279 phi 179.0360 theta 162.3410 psi -34.7550 dx 0.7500 dy 0.0000 dz -1.4500 Extracting a particle size of 80 82 66 Particle 125 tomNum 1 ModelIndex 125 included CCC=0.3693 phi 55.7489 theta 65.0499 psi -17.9356 dx 0.1500 dy 0.2000 dz 3.0500 Extracting a particle size of 84 78 86 Particle 127 tomNum 1 ModelIndex 127 included CCC=0.3738 phi -13.4282 theta 139.3600 psi 54.0846 dx 1.6500 dy -0.4000 dz 2.2000 Extracting a particle size of 88 78 80 Particle 129 tomNum 1 ModelIndex 129 included CCC=0.4035 phi 56.0218 theta 100.7720 psi -119.8060 dx 2.4500 dy 0.1500 dz 2.1500 Extracting a particle size of 82 86 80 Particle 131 tomNum 1 ModelIndex 131 included CCC=0.3753 phi 31.7960 theta 92.3104 psi 136.0450 dx 1.7500 dy -0.8000 dz 2.9500 Extracting a particle size of 88 86 74 61 particles from Tom 1 have been added to the average Wrote average volume bpv_AvgVol_4P61.mrc Total execution time : 54.384878 seconds Starting logWarningsAndErrors_mce ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. Created LOGFILE: bpv_WarningsAndErrors.log SUCCESSFULLY COMPLETED CHUNK DONE