Starting checkAlignmentLogs ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. **************************************************************************** Out of 132 particles: The best angle was found at the end of the search range for: phi 1 ( 0.8%) theta 0 ( 0.0%) psi 1 ( 0.8%) any angle 2 ( 1.5%) The best shift was found at the end of the search range for: X 0 ( 0.0%) Y 0 ( 0.0%) Z 0 ( 0.0%) any shift 0 ( 0.0%) **************************************************************************** Starting mergeEM_mce ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. Starting averageAll_mce ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. Parameter file: bpv.prm Reference is the 24th particle of tom 1 szVol: 52 52 52 fnOutput: bpv dPhi is from -3.00 to 3.00 degrees dTheta is from -3.00 to 3.00 degrees dPsi is from -3.00 to 3.00 degrees searchRadius is x:2 y:2 z:2 voxels lowCutoff is 0.00 0.05 highCutoff is 0.15 0.05 CCMode: 1 refThreshold: 40 edgeShift 1 flgWedgeWeight 1 nWeightGroup 8 lstThresholds: 50 lstThresholds: 100 lstThresholds: 132 alignedBaseName debugLevsel: 3 flgAlignAverages: 0 selectClassID: [ 2 ] Group 1 median CCC = 0.382368, count = 20 Group 2 median CCC = 0.368378, count = 29 Group 3 median CCC = 0.370889, count = 10 Group 4 median CCC = 0.359051, count = 9 Group 5 median CCC = 0.373587, count = 6 Group 6 median CCC = 0.36537, count = 12 Group 7 median CCC = 0.373808, count = 30 Group 8 median CCC = 0.375509, count = 16 Correct particle 1 CCC from 0.374515 to 0.370138 Correct particle 2 CCC from 0.380607 to 0.386597 Correct particle 3 CCC from 0.373405 to 0.369041 Correct particle 4 CCC from 0.400332 to 0.388556 Correct particle 5 CCC from 0.299862 to 0.291041 Correct particle 6 CCC from 0.302236 to 0.300063 Correct particle 7 CCC from 0.266625 to 0.26861 Correct particle 8 CCC from 0.385004 to 0.38787 Correct particle 9 CCC from 0.389183 to 0.39208 Correct particle 10 CCC from 0.3654 to 0.371151 Correct particle 11 CCC from 0.288061 to 0.28824 Correct particle 12 CCC from 0.368378 to 0.37112 Correct particle 13 CCC from 0.386932 to 0.389812 Correct particle 14 CCC from 0.333987 to 0.345214 Correct particle 15 CCC from 0.382939 to 0.371674 Correct particle 16 CCC from 0.372065 to 0.36939 Correct particle 17 CCC from 0.364725 to 0.362102 Correct particle 18 CCC from 0.28462 to 0.276247 Correct particle 19 CCC from 0.282678 to 0.280645 Correct particle 20 CCC from 0.396814 to 0.399768 Correct particle 21 CCC from 0.289274 to 0.287194 Correct particle 22 CCC from 0.386869 to 0.384087 Correct particle 23 CCC from 0.392657 to 0.390064 Correct particle 24 CCC from 0.394021 to 0.396954 Correct particle 25 CCC from 0.383221 to 0.371948 Correct particle 26 CCC from 0.307303 to 0.312139 Correct particle 27 CCC from 0.29239 to 0.288973 Correct particle 28 CCC from 0.380498 to 0.386486 Correct particle 29 CCC from 0.387744 to 0.393846 Correct particle 30 CCC from 0.304181 to 0.300626 Correct particle 31 CCC from 0.385711 to 0.388582 Correct particle 32 CCC from 0.386364 to 0.399351 Correct particle 33 CCC from 0.376315 to 0.373609 Correct particle 34 CCC from 0.407535 to 0.404605 Correct particle 35 CCC from 0.366247 to 0.361966 Correct particle 36 CCC from 0.37687 to 0.379675 Correct particle 37 CCC from 0.354307 to 0.356944 Correct particle 38 CCC from 0.214838 to 0.213293 Correct particle 39 CCC from 0.251303 to 0.249644 Correct particle 40 CCC from 0.387569 to 0.383039 Correct particle 41 CCC from 0.227504 to 0.231084 Correct particle 42 CCC from 0.327427 to 0.325073 Correct particle 43 CCC from 0.393284 to 0.381715 Correct particle 44 CCC from 0.383245 to 0.371971 Correct particle 45 CCC from 0.384887 to 0.382119 Correct particle 46 CCC from 0.261462 to 0.263408 Correct particle 47 CCC from 0.360594 to 0.366269 Correct particle 48 CCC from 0.176243 to 0.174976 Correct particle 49 CCC from 0.399281 to 0.402253 Correct particle 50 CCC from 0.418528 to 0.418788 Correct particle 51 CCC from 0.359774 to 0.365436 Correct particle 52 CCC from 0.385083 to 0.387949 Correct particle 53 CCC from 0.358048 to 0.347515 Correct particle 54 CCC from 0.381214 to 0.381451 Correct particle 55 CCC from 0.413047 to 0.408219 Correct particle 56 CCC from 0.392329 to 0.405517 Correct particle 57 CCC from 0.418476 to 0.406166 Correct particle 58 CCC from 0.310363 to 0.312673 Correct particle 59 CCC from 0.403116 to 0.400217 Correct particle 60 CCC from 0.416122 to 0.411258 Correct particle 61 CCC from 0.370551 to 0.373309 Correct particle 62 CCC from 0.264995 to 0.263245 Correct particle 63 CCC from 0.299198 to 0.297047 Correct particle 64 CCC from 0.286054 to 0.288183 Correct particle 65 CCC from 0.265999 to 0.258174 Correct particle 66 CCC from 0.372571 to 0.361611 Correct particle 67 CCC from 0.337511 to 0.327583 Correct particle 68 CCC from 0.399181 to 0.394515 Correct particle 69 CCC from 0.354271 to 0.366179 Correct particle 70 CCC from 0.396128 to 0.409443 Correct particle 71 CCC from 0.412051 to 0.39993 Correct particle 72 CCC from 0.288056 to 0.2902 Correct particle 73 CCC from 0.38335 to 0.380819 Correct particle 74 CCC from 0.295672 to 0.295856 Correct particle 75 CCC from 0.300117 to 0.302351 Correct particle 76 CCC from 0.405372 to 0.402457 Correct particle 77 CCC from 0.275301 to 0.27735 Correct particle 78 CCC from 0.336075 to 0.347372 Correct particle 79 CCC from 0.357156 to 0.354588 Correct particle 80 CCC from 0.411338 to 0.399238 Correct particle 81 CCC from 0.366172 to 0.363539 Correct particle 82 CCC from 0.388678 to 0.391571 Correct particle 83 CCC from 0.369312 to 0.375124 Correct particle 84 CCC from 0.375155 to 0.372457 Correct particle 85 CCC from 0.299387 to 0.301616 Correct particle 86 CCC from 0.391824 to 0.389007 Correct particle 87 CCC from 0.370052 to 0.375876 Correct particle 88 CCC from 0.368473 to 0.368702 Correct particle 89 CCC from 0.369088 to 0.369317 Correct particle 90 CCC from 0.39349 to 0.396419 Correct particle 91 CCC from 0.337789 to 0.33536 Correct particle 92 CCC from 0.259329 to 0.268046 Correct particle 93 CCC from 0.402482 to 0.405478 Correct particle 94 CCC from 0.390154 to 0.387578 Correct particle 95 CCC from 0.314523 to 0.316864 Correct particle 96 CCC from 0.294542 to 0.291099 Correct particle 97 CCC from 0.406004 to 0.401259 Correct particle 98 CCC from 0.284434 to 0.282389 Correct particle 99 CCC from 0.410801 to 0.407847 Correct particle 100 CCC from 0.389965 to 0.390207 Correct particle 101 CCC from 0.373102 to 0.373334 Correct particle 102 CCC from 0.411483 to 0.399379 Correct particle 103 CCC from 0.381797 to 0.370566 Correct particle 104 CCC from 0.363824 to 0.361422 Correct particle 105 CCC from 0.378185 to 0.373765 Correct particle 106 CCC from 0.354043 to 0.343628 Correct particle 107 CCC from 0.214093 to 0.214226 Correct particle 108 CCC from 0.372461 to 0.369783 Correct particle 109 CCC from 0.366846 to 0.362558 Correct particle 110 CCC from 0.30018 to 0.302414 Correct particle 111 CCC from 0.36534 to 0.37109 Correct particle 112 CCC from 0.38714 to 0.384356 Correct particle 113 CCC from 0.387652 to 0.400682 Correct particle 114 CCC from 0.285809 to 0.277401 Correct particle 115 CCC from 0.365863 to 0.363232 Correct particle 116 CCC from 0.395387 to 0.392544 Correct particle 117 CCC from 0.390198 to 0.385637 Correct particle 118 CCC from 0.279324 to 0.271107 Correct particle 119 CCC from 0.285563 to 0.282225 Correct particle 120 CCC from 0.396843 to 0.393989 Correct particle 121 CCC from 0.248052 to 0.249898 Correct particle 122 CCC from 0.24446 to 0.24628 Correct particle 123 CCC from 0.359051 to 0.37112 Correct particle 124 CCC from 0.415956 to 0.412965 Correct particle 125 CCC from 0.340329 to 0.345685 Correct particle 126 CCC from 0.387147 to 0.390029 Correct particle 127 CCC from 0.372691 to 0.372923 Correct particle 128 CCC from 0.384467 to 0.381702 Correct particle 129 CCC from 0.389853 to 0.38705 Correct particle 130 CCC from 0.386698 to 0.375323 Correct particle 131 CCC from 0.376503 to 0.372102 Correct particle 132 CCC from 0.243607 to 0.24542 Group medians adjusted to 0.37112 Group 1 original median = 0.382368 Group 2 original median = 0.368378 Group 3 original median = 0.370889 Group 4 original median = 0.359051 Group 5 original median = 0.373587 Group 6 original median = 0.36537 Group 7 original median = 0.373808 Group 8 original median = 0.375509 Reference rotation axis estimated as 0.06589 0.993779 0.089783 Generating the reference volume for iteration 5 Particle 2 tomNum 1 ModelIndex 2 included CCC=0.3866 phi 169.4550 theta 17.6258 psi 16.1230 dx -0.8500 dy 0.7000 dz 2.9000 Extracting a particle size of 118 138 132 WARNING: Z axis minimum index out of range by 32 voxels! Particle 4 tomNum 1 ModelIndex 4 included CCC=0.3886 phi -91.4112 theta 59.4616 psi -114.9220 dx 0.0500 dy 2.0000 dz -0.5000 Extracting a particle size of 170 152 142 WARNING: X axis minimum index out of range by 29 voxels! WARNING: Z axis minimum index out of range by 34 voxels! Particle 8 tomNum 1 ModelIndex 8 included CCC=0.3879 phi -90.6961 theta 47.3490 psi 169.9760 dx 1.4000 dy 0.5000 dz -4.0500 Extracting a particle size of 126 160 144 WARNING: Z axis minimum index out of range by 32 voxels! Particle 10 tomNum 1 ModelIndex 10 included CCC=0.3712 phi 147.6110 theta 20.0488 psi 81.2667 dx -1.7000 dy -2.3000 dz -0.3000 Extracting a particle size of 170 148 144 WARNING: Z axis minimum index out of range by 31 voxels! Particle 12 tomNum 1 ModelIndex 12 included CCC=0.3711 phi -98.3762 theta 19.1249 psi 61.2315 dx 3.1000 dy -3.2500 dz -2.4000 Extracting a particle size of 166 156 134 WARNING: Z axis minimum index out of range by 32 voxels! Particle 16 tomNum 1 ModelIndex 16 included CCC=0.3694 phi 86.6138 theta 166.3500 psi -7.0693 dx 2.0500 dy -1.8000 dz 2.3000 Extracting a particle size of 110 130 124 WARNING: Z axis minimum index out of range by 18 voxels! Particle 20 tomNum 1 ModelIndex 20 included CCC=0.3998 phi -130.4820 theta 76.0611 psi 103.0050 dx 1.9500 dy -0.3000 dz -1.8500 Extracting a particle size of 132 162 164 WARNING: Z axis minimum index out of range by 42 voxels! Particle 22 tomNum 1 ModelIndex 22 included CCC=0.3841 phi 127.1280 theta 147.6530 psi -89.6520 dx -1.2500 dy 2.4500 dz 3.3500 Extracting a particle size of 174 142 162 WARNING: X axis minimum index out of range by 7 voxels! WARNING: Z axis minimum index out of range by 32 voxels! Particle 24 tomNum 1 ModelIndex 24 included CCC=0.3970 phi -136.1690 theta 29.3370 psi 34.8250 dx 0.0500 dy 0.1000 dz 0.0000 Extracting a particle size of 148 146 160 WARNING: Z axis minimum index out of range by 35 voxels! Particle 28 tomNum 1 ModelIndex 28 included CCC=0.3865 phi 95.9245 theta 82.4765 psi 32.4510 dx 0.1500 dy 1.0500 dz 0.5500 Extracting a particle size of 154 146 124 WARNING: Z axis minimum index out of range by 23 voxels! Particle 32 tomNum 1 ModelIndex 32 included CCC=0.3994 phi -23.1826 theta 127.1100 psi 72.4961 dx -0.1000 dy 1.8500 dz 3.9500 Extracting a particle size of 148 142 168 WARNING: Z axis minimum index out of range by 48 voxels! Particle 34 tomNum 1 ModelIndex 34 included CCC=0.4046 phi 14.7580 theta 150.1250 psi -102.2950 dx -0.8000 dy -1.4500 dz 2.9000 Extracting a particle size of 170 146 150 WARNING: Z axis minimum index out of range by 31 voxels! Particle 36 tomNum 1 ModelIndex 36 included CCC=0.3797 phi -101.8910 theta 19.9484 psi 60.7840 dx 0.6000 dy -2.8500 dz -0.1000 Extracting a particle size of 168 158 136 WARNING: Z axis minimum index out of range by 29 voxels! Particle 40 tomNum 1 ModelIndex 40 included CCC=0.3830 phi 16.4010 theta 123.3050 psi 74.4803 dx -0.3500 dy 3.4500 dz -1.2500 Extracting a particle size of 166 154 162 WARNING: Z axis minimum index out of range by 38 voxels! Particle 44 tomNum 1 ModelIndex 44 included CCC=0.3720 phi -40.5521 theta 45.6075 psi -104.7780 dx 0.5500 dy -2.2000 dz -1.4500 Extracting a particle size of 170 160 174 WARNING: X axis maximum index out of range by 20 voxels! WARNING: Z axis minimum index out of range by 35 voxels! WARNING: Z axis maximum index out of range by 3 voxels! Particle 50 tomNum 1 ModelIndex 50 included CCC=0.4188 phi -138.3550 theta 96.0615 psi -107.8160 dx 1.7500 dy 1.7000 dz 0.4500 Extracting a particle size of 140 168 154 WARNING: Z axis minimum index out of range by 26 voxels! Particle 52 tomNum 1 ModelIndex 52 included CCC=0.3879 phi -152.6040 theta 89.2064 psi 172.1180 dx 2.5500 dy -2.2500 dz -4.3000 Extracting a particle size of 150 120 138 WARNING: Z axis minimum index out of range by 18 voxels! Particle 54 tomNum 1 ModelIndex 54 included CCC=0.3815 phi -38.7723 theta 156.3990 psi -75.4606 dx 3.1500 dy 0.1000 dz -0.2500 Extracting a particle size of 170 152 150 WARNING: Z axis minimum index out of range by 21 voxels! Particle 56 tomNum 1 ModelIndex 56 included CCC=0.4055 phi -129.4760 theta 120.7700 psi 174.8850 dx 2.4500 dy -0.6000 dz -0.9000 Extracting a particle size of 150 158 174 WARNING: Z axis minimum index out of range by 33 voxels! WARNING: Z axis maximum index out of range by 5 voxels! Particle 60 tomNum 1 ModelIndex 60 included CCC=0.4113 phi 71.2945 theta 109.9480 psi 94.9861 dx 0.3000 dy 0.4000 dz -1.5000 Extracting a particle size of 144 138 156 WARNING: X axis maximum index out of range by 39 voxels! WARNING: Z axis minimum index out of range by 17 voxels! WARNING: Z axis maximum index out of range by 3 voxels! Particle 68 tomNum 1 ModelIndex 68 included CCC=0.3945 phi 4.5724 theta 138.6970 psi 16.6842 dx 2.1500 dy 1.4500 dz 1.4000 Extracting a particle size of 132 162 148 WARNING: Z axis minimum index out of range by 16 voxels! Particle 70 tomNum 1 ModelIndex 70 included CCC=0.4094 phi -29.2884 theta 99.4176 psi 75.3602 dx -1.2000 dy -0.2500 dz -2.4500 Extracting a particle size of 138 158 154 WARNING: Z axis minimum index out of range by 22 voxels! Particle 76 tomNum 1 ModelIndex 76 included CCC=0.4025 phi 71.7025 theta 113.0460 psi -100.6420 dx 1.1500 dy -1.6000 dz 3.1500 Extracting a particle size of 140 138 158 WARNING: Z axis minimum index out of range by 16 voxels! WARNING: Z axis maximum index out of range by 6 voxels! Particle 80 tomNum 1 ModelIndex 80 included CCC=0.3992 phi -117.9450 theta 85.3232 psi -70.7947 dx -0.2500 dy 2.5000 dz -2.4500 Extracting a particle size of 144 162 146 WARNING: Y axis minimum index out of range by 6 voxels! WARNING: Z axis minimum index out of range by 11 voxels! Particle 82 tomNum 1 ModelIndex 82 included CCC=0.3916 phi -163.2900 theta 50.2815 psi 105.2490 dx 0.3500 dy -5.1500 dz 0.2000 Extracting a particle size of 172 154 162 WARNING: Z axis minimum index out of range by 18 voxels! WARNING: Z axis maximum index out of range by 8 voxels! Particle 84 tomNum 1 ModelIndex 84 included CCC=0.3725 phi 17.4379 theta 104.2000 psi -50.4697 dx 2.1000 dy -3.1500 dz 0.2000 Extracting a particle size of 170 150 148 WARNING: Z axis minimum index out of range by 11 voxels! WARNING: Z axis maximum index out of range by 1 voxels! Particle 86 tomNum 1 ModelIndex 86 included CCC=0.3890 phi 61.0206 theta 100.6670 psi -25.3231 dx 1.0500 dy -0.0500 dz 3.3000 Extracting a particle size of 164 156 154 WARNING: Z axis minimum index out of range by 15 voxels! WARNING: Z axis maximum index out of range by 3 voxels! Particle 88 tomNum 1 ModelIndex 88 included CCC=0.3687 phi -160.5470 theta 102.4730 psi -37.6128 dx -1.5000 dy 1.1000 dz 2.1500 Extracting a particle size of 172 148 148 WARNING: Z axis minimum index out of range by 14 voxels! Particle 90 tomNum 1 ModelIndex 90 included CCC=0.3964 phi -84.2661 theta 78.1003 psi 93.2594 dx -0.8000 dy -0.5000 dz -1.1000 Extracting a particle size of 128 118 130 WARNING: Z axis minimum index out of range by 7 voxels! Particle 94 tomNum 1 ModelIndex 94 included CCC=0.3876 phi 140.6000 theta 84.7102 psi -72.3986 dx -0.0500 dy 1.8500 dz 3.3500 Extracting a particle size of 142 166 152 WARNING: Z axis minimum index out of range by 16 voxels! Particle 100 tomNum 1 ModelIndex 100 included CCC=0.3902 phi -151.4860 theta 92.1056 psi -113.7150 dx 1.9000 dy 0.4000 dz -3.3500 Extracting a particle size of 148 168 142 WARNING: Z axis minimum index out of range by 14 voxels! Particle 102 tomNum 1 ModelIndex 102 included CCC=0.3994 phi -84.5395 theta 61.6085 psi -31.3207 dx 1.6500 dy -1.6500 dz -2.2000 Extracting a particle size of 152 172 146 WARNING: Z axis minimum index out of range by 20 voxels! Particle 108 tomNum 1 ModelIndex 108 included CCC=0.3698 phi 46.1059 theta 89.8642 psi -133.6850 dx 0.4000 dy -2.7500 dz 2.0500 Extracting a particle size of 172 174 144 WARNING: Y axis minimum index out of range by 43 voxels! WARNING: Z axis minimum index out of range by 9 voxels! Particle 112 tomNum 1 ModelIndex 112 included CCC=0.3844 phi 101.3790 theta 141.7700 psi -83.9894 dx -1.1500 dy -1.7500 dz 4.8000 Extracting a particle size of 148 120 154 WARNING: Z axis minimum index out of range by 20 voxels! Particle 116 tomNum 1 ModelIndex 116 included CCC=0.3925 phi 126.1540 theta 103.7230 psi -55.2878 dx -0.5500 dy -0.5000 dz 0.0500 Extracting a particle size of 166 170 162 WARNING: Z axis minimum index out of range by 23 voxels! WARNING: Z axis maximum index out of range by 3 voxels! Particle 120 tomNum 1 ModelIndex 120 included CCC=0.3940 phi 26.5179 theta 95.6018 psi -156.3420 dx -2.8500 dy -2.0500 dz -1.1000 Extracting a particle size of 164 152 146 WARNING: Z axis minimum index out of range by 19 voxels! Particle 124 tomNum 1 ModelIndex 124 included CCC=0.4130 phi 29.1426 theta 101.7940 psi -138.7660 dx 0.9500 dy -3.2500 dz 0.3000 Extracting a particle size of 164 172 156 WARNING: X axis minimum index out of range by 31 voxels! WARNING: Z axis minimum index out of range by 24 voxels! Particle 126 tomNum 1 ModelIndex 126 included CCC=0.3900 phi -6.8257 theta 11.1667 psi 59.5347 dx 1.9000 dy 1.2000 dz 0.1000 Extracting a particle size of 158 152 122 WARNING: Z axis minimum index out of range by 2 voxels! Particle 128 tomNum 1 ModelIndex 128 included CCC=0.3817 phi 30.2045 theta 142.8510 psi -148.9040 dx -2.5000 dy -2.2000 dz 3.4000 Extracting a particle size of 136 150 164 WARNING: Z axis minimum index out of range by 21 voxels! WARNING: Z axis maximum index out of range by 7 voxels! Particle 130 tomNum 1 ModelIndex 130 included CCC=0.3753 phi -86.7004 theta 56.1642 psi -47.5224 dx -0.8000 dy 0.8500 dz -0.5000 Extracting a particle size of 170 172 146 WARNING: Y axis minimum index out of range by 19 voxels! WARNING: Z axis minimum index out of range by 13 voxels! 40 particles from Tom 1 have been added to the reference Generating averages from iteration 4 Group 1 median CCC = 0.382368, count = 20 Group 2 median CCC = 0.368378, count = 29 Group 3 median CCC = 0.370889, count = 10 Group 4 median CCC = 0.359051, count = 9 Group 5 median CCC = 0.373587, count = 6 Group 6 median CCC = 0.36537, count = 12 Group 7 median CCC = 0.373808, count = 30 Group 8 median CCC = 0.375509, count = 16 Correct particle 1 CCC from 0.374515 to 0.370138 Correct particle 2 CCC from 0.380607 to 0.386597 Correct particle 3 CCC from 0.373405 to 0.369041 Correct particle 4 CCC from 0.400332 to 0.388556 Correct particle 5 CCC from 0.299862 to 0.291041 Correct particle 6 CCC from 0.302236 to 0.300063 Correct particle 7 CCC from 0.266625 to 0.26861 Correct particle 8 CCC from 0.385004 to 0.38787 Correct particle 9 CCC from 0.389183 to 0.39208 Correct particle 10 CCC from 0.3654 to 0.371151 Correct particle 11 CCC from 0.288061 to 0.28824 Correct particle 12 CCC from 0.368378 to 0.37112 Correct particle 13 CCC from 0.386932 to 0.389812 Correct particle 14 CCC from 0.333987 to 0.345214 Correct particle 15 CCC from 0.382939 to 0.371674 Correct particle 16 CCC from 0.372065 to 0.36939 Correct particle 17 CCC from 0.364725 to 0.362102 Correct particle 18 CCC from 0.28462 to 0.276247 Correct particle 19 CCC from 0.282678 to 0.280645 Correct particle 20 CCC from 0.396814 to 0.399768 Correct particle 21 CCC from 0.289274 to 0.287194 Correct particle 22 CCC from 0.386869 to 0.384087 Correct particle 23 CCC from 0.392657 to 0.390064 Correct particle 24 CCC from 0.394021 to 0.396954 Correct particle 25 CCC from 0.383221 to 0.371948 Correct particle 26 CCC from 0.307303 to 0.312139 Correct particle 27 CCC from 0.29239 to 0.288973 Correct particle 28 CCC from 0.380498 to 0.386486 Correct particle 29 CCC from 0.387744 to 0.393846 Correct particle 30 CCC from 0.304181 to 0.300626 Correct particle 31 CCC from 0.385711 to 0.388582 Correct particle 32 CCC from 0.386364 to 0.399351 Correct particle 33 CCC from 0.376315 to 0.373609 Correct particle 34 CCC from 0.407535 to 0.404605 Correct particle 35 CCC from 0.366247 to 0.361966 Correct particle 36 CCC from 0.37687 to 0.379675 Correct particle 37 CCC from 0.354307 to 0.356944 Correct particle 38 CCC from 0.214838 to 0.213293 Correct particle 39 CCC from 0.251303 to 0.249644 Correct particle 40 CCC from 0.387569 to 0.383039 Correct particle 41 CCC from 0.227504 to 0.231084 Correct particle 42 CCC from 0.327427 to 0.325073 Correct particle 43 CCC from 0.393284 to 0.381715 Correct particle 44 CCC from 0.383245 to 0.371971 Correct particle 45 CCC from 0.384887 to 0.382119 Correct particle 46 CCC from 0.261462 to 0.263408 Correct particle 47 CCC from 0.360594 to 0.366269 Correct particle 48 CCC from 0.176243 to 0.174976 Correct particle 49 CCC from 0.399281 to 0.402253 Correct particle 50 CCC from 0.418528 to 0.418788 Correct particle 51 CCC from 0.359774 to 0.365436 Correct particle 52 CCC from 0.385083 to 0.387949 Correct particle 53 CCC from 0.358048 to 0.347515 Correct particle 54 CCC from 0.381214 to 0.381451 Correct particle 55 CCC from 0.413047 to 0.408219 Correct particle 56 CCC from 0.392329 to 0.405517 Correct particle 57 CCC from 0.418476 to 0.406166 Correct particle 58 CCC from 0.310363 to 0.312673 Correct particle 59 CCC from 0.403116 to 0.400217 Correct particle 60 CCC from 0.416122 to 0.411258 Correct particle 61 CCC from 0.370551 to 0.373309 Correct particle 62 CCC from 0.264995 to 0.263245 Correct particle 63 CCC from 0.299198 to 0.297047 Correct particle 64 CCC from 0.286054 to 0.288183 Correct particle 65 CCC from 0.265999 to 0.258174 Correct particle 66 CCC from 0.372571 to 0.361611 Correct particle 67 CCC from 0.337511 to 0.327583 Correct particle 68 CCC from 0.399181 to 0.394515 Correct particle 69 CCC from 0.354271 to 0.366179 Correct particle 70 CCC from 0.396128 to 0.409443 Correct particle 71 CCC from 0.412051 to 0.39993 Correct particle 72 CCC from 0.288056 to 0.2902 Correct particle 73 CCC from 0.38335 to 0.380819 Correct particle 74 CCC from 0.295672 to 0.295856 Correct particle 75 CCC from 0.300117 to 0.302351 Correct particle 76 CCC from 0.405372 to 0.402457 Correct particle 77 CCC from 0.275301 to 0.27735 Correct particle 78 CCC from 0.336075 to 0.347372 Correct particle 79 CCC from 0.357156 to 0.354588 Correct particle 80 CCC from 0.411338 to 0.399238 Correct particle 81 CCC from 0.366172 to 0.363539 Correct particle 82 CCC from 0.388678 to 0.391571 Correct particle 83 CCC from 0.369312 to 0.375124 Correct particle 84 CCC from 0.375155 to 0.372457 Correct particle 85 CCC from 0.299387 to 0.301616 Correct particle 86 CCC from 0.391824 to 0.389007 Correct particle 87 CCC from 0.370052 to 0.375876 Correct particle 88 CCC from 0.368473 to 0.368702 Correct particle 89 CCC from 0.369088 to 0.369317 Correct particle 90 CCC from 0.39349 to 0.396419 Correct particle 91 CCC from 0.337789 to 0.33536 Correct particle 92 CCC from 0.259329 to 0.268046 Correct particle 93 CCC from 0.402482 to 0.405478 Correct particle 94 CCC from 0.390154 to 0.387578 Correct particle 95 CCC from 0.314523 to 0.316864 Correct particle 96 CCC from 0.294542 to 0.291099 Correct particle 97 CCC from 0.406004 to 0.401259 Correct particle 98 CCC from 0.284434 to 0.282389 Correct particle 99 CCC from 0.410801 to 0.407847 Correct particle 100 CCC from 0.389965 to 0.390207 Correct particle 101 CCC from 0.373102 to 0.373334 Correct particle 102 CCC from 0.411483 to 0.399379 Correct particle 103 CCC from 0.381797 to 0.370566 Correct particle 104 CCC from 0.363824 to 0.361422 Correct particle 105 CCC from 0.378185 to 0.373765 Correct particle 106 CCC from 0.354043 to 0.343628 Correct particle 107 CCC from 0.214093 to 0.214226 Correct particle 108 CCC from 0.372461 to 0.369783 Correct particle 109 CCC from 0.366846 to 0.362558 Correct particle 110 CCC from 0.30018 to 0.302414 Correct particle 111 CCC from 0.36534 to 0.37109 Correct particle 112 CCC from 0.38714 to 0.384356 Correct particle 113 CCC from 0.387652 to 0.400682 Correct particle 114 CCC from 0.285809 to 0.277401 Correct particle 115 CCC from 0.365863 to 0.363232 Correct particle 116 CCC from 0.395387 to 0.392544 Correct particle 117 CCC from 0.390198 to 0.385637 Correct particle 118 CCC from 0.279324 to 0.271107 Correct particle 119 CCC from 0.285563 to 0.282225 Correct particle 120 CCC from 0.396843 to 0.393989 Correct particle 121 CCC from 0.248052 to 0.249898 Correct particle 122 CCC from 0.24446 to 0.24628 Correct particle 123 CCC from 0.359051 to 0.37112 Correct particle 124 CCC from 0.415956 to 0.412965 Correct particle 125 CCC from 0.340329 to 0.345685 Correct particle 126 CCC from 0.387147 to 0.390029 Correct particle 127 CCC from 0.372691 to 0.372923 Correct particle 128 CCC from 0.384467 to 0.381702 Correct particle 129 CCC from 0.389853 to 0.38705 Correct particle 130 CCC from 0.386698 to 0.375323 Correct particle 131 CCC from 0.376503 to 0.372102 Correct particle 132 CCC from 0.243607 to 0.24542 Group medians adjusted to 0.37112 Group 1 original median = 0.382368 Group 2 original median = 0.368378 Group 3 original median = 0.370889 Group 4 original median = 0.359051 Group 5 original median = 0.373587 Group 6 original median = 0.36537 Group 7 original median = 0.373808 Group 8 original median = 0.375509 WARNING: More particles were requested than are available! WARNING: Too many particles requested... using all available! Progressively generating a new average volume Particle 2 tomNum 1 ModelIndex 2 included CCC=0.3866 phi 169.4550 theta 17.6258 psi 16.1230 dx -0.8500 dy 0.7000 dz 2.9000 Extracting a particle size of 60 70 68 Particle 4 tomNum 1 ModelIndex 4 included CCC=0.3886 phi -91.4112 theta 59.4616 psi -114.9220 dx 0.0500 dy 2.0000 dz -0.5000 Extracting a particle size of 86 78 72 Particle 8 tomNum 1 ModelIndex 8 included CCC=0.3879 phi -90.6961 theta 47.3490 psi 169.9760 dx 1.4000 dy 0.5000 dz -4.0500 Extracting a particle size of 64 82 74 Particle 10 tomNum 1 ModelIndex 10 included CCC=0.3712 phi 147.6110 theta 20.0488 psi 81.2667 dx -1.7000 dy -2.3000 dz -0.3000 Extracting a particle size of 86 76 74 Particle 12 tomNum 1 ModelIndex 12 included CCC=0.3711 phi -98.3762 theta 19.1249 psi 61.2315 dx 3.1000 dy -3.2500 dz -2.4000 Extracting a particle size of 84 80 68 Particle 14 tomNum 1 ModelIndex 14 included CCC=0.3452 phi -147.2260 theta 96.6817 psi 52.5437 dx 0.2500 dy -2.0000 dz 3.1500 Extracting a particle size of 82 88 76 WARNING: Z axis minimum index out of range by 5 voxels! Particle 16 tomNum 1 ModelIndex 16 included CCC=0.3694 phi 86.6138 theta 166.3500 psi -7.0693 dx 2.0500 dy -1.8000 dz 2.3000 Extracting a particle size of 56 66 64 Particle 20 tomNum 1 ModelIndex 20 included CCC=0.3998 phi -130.4820 theta 76.0611 psi 103.0050 dx 1.9500 dy -0.3000 dz -1.8500 Extracting a particle size of 66 82 84 WARNING: Z axis minimum index out of range by 2 voxels! Particle 22 tomNum 1 ModelIndex 22 included CCC=0.3841 phi 127.1280 theta 147.6530 psi -89.6520 dx -1.2500 dy 2.4500 dz 3.3500 Extracting a particle size of 88 72 82 Particle 24 tomNum 1 ModelIndex 24 included CCC=0.3970 phi -136.1690 theta 29.3370 psi 34.8250 dx 0.0500 dy 0.1000 dz 0.0000 Extracting a particle size of 76 74 80 Particle 26 tomNum 1 ModelIndex 26 included CCC=0.3121 phi 32.3256 theta 74.7693 psi 53.3822 dx 1.8000 dy 1.4000 dz -2.2000 Extracting a particle size of 86 84 82 WARNING: Z axis minimum index out of range by 1 voxels! Particle 28 tomNum 1 ModelIndex 28 included CCC=0.3865 phi 95.9245 theta 82.4765 psi 32.4510 dx 0.1500 dy 1.0500 dz 0.5500 Extracting a particle size of 78 74 64 Particle 30 tomNum 1 ModelIndex 30 included CCC=0.3006 phi 55.4150 theta 126.0790 psi 105.4670 dx -1.1000 dy 1.4500 dz 3.2000 Extracting a particle size of 84 82 88 WARNING: Z axis minimum index out of range by 2 voxels! Particle 32 tomNum 1 ModelIndex 32 included CCC=0.3994 phi -23.1826 theta 127.1100 psi 72.4961 dx -0.1000 dy 1.8500 dz 3.9500 Extracting a particle size of 76 72 86 WARNING: Z axis minimum index out of range by 7 voxels! Particle 34 tomNum 1 ModelIndex 34 included CCC=0.4046 phi 14.7580 theta 150.1250 psi -102.2950 dx -0.8000 dy -1.4500 dz 2.9000 Extracting a particle size of 86 74 76 Particle 36 tomNum 1 ModelIndex 36 included CCC=0.3797 phi -101.8910 theta 19.9484 psi 60.7840 dx 0.6000 dy -2.8500 dz -0.1000 Extracting a particle size of 84 80 70 Particle 40 tomNum 1 ModelIndex 40 included CCC=0.3830 phi 16.4010 theta 123.3050 psi 74.4803 dx -0.3500 dy 3.4500 dz -1.2500 Extracting a particle size of 84 78 82 Particle 42 tomNum 1 ModelIndex 42 included CCC=0.3251 phi 141.0770 theta 105.1060 psi -57.4902 dx -0.9500 dy 2.4000 dz 0.5000 Extracting a particle size of 80 90 84 Particle 44 tomNum 1 ModelIndex 44 included CCC=0.3720 phi -40.5521 theta 45.6075 psi -104.7780 dx 0.5500 dy -2.2000 dz -1.4500 Extracting a particle size of 86 80 88 Particle 50 tomNum 1 ModelIndex 50 included CCC=0.4188 phi -138.3550 theta 96.0615 psi -107.8160 dx 1.7500 dy 1.7000 dz 0.4500 Extracting a particle size of 70 86 78 Particle 52 tomNum 1 ModelIndex 52 included CCC=0.3879 phi -152.6040 theta 89.2064 psi 172.1180 dx 2.5500 dy -2.2500 dz -4.3000 Extracting a particle size of 76 62 70 Particle 54 tomNum 1 ModelIndex 54 included CCC=0.3815 phi -38.7723 theta 156.3990 psi -75.4606 dx 3.1500 dy 0.1000 dz -0.2500 Extracting a particle size of 86 78 76 Particle 56 tomNum 1 ModelIndex 56 included CCC=0.4055 phi -129.4760 theta 120.7700 psi 174.8850 dx 2.4500 dy -0.6000 dz -0.9000 Extracting a particle size of 76 80 88 Particle 58 tomNum 1 ModelIndex 58 included CCC=0.3127 phi -146.7820 theta 50.7469 psi 89.4285 dx 0.7500 dy -2.2500 dz -3.7000 Extracting a particle size of 86 72 88 Particle 60 tomNum 1 ModelIndex 60 included CCC=0.4113 phi 71.2945 theta 109.9480 psi 94.9861 dx 0.3000 dy 0.4000 dz -1.5000 Extracting a particle size of 74 70 80 WARNING: X axis maximum index out of range by 4 voxels! Particle 66 tomNum 1 ModelIndex 66 included CCC=0.3616 phi -164.4020 theta 42.3257 psi -71.6124 dx -0.1000 dy 2.7000 dz 0.3000 Extracting a particle size of 88 80 82 Particle 68 tomNum 1 ModelIndex 68 included CCC=0.3945 phi 4.5724 theta 138.6970 psi 16.6842 dx 2.1500 dy 1.4500 dz 1.4000 Extracting a particle size of 68 82 76 Particle 70 tomNum 1 ModelIndex 70 included CCC=0.4094 phi -29.2884 theta 99.4176 psi 75.3602 dx -1.2000 dy -0.2500 dz -2.4500 Extracting a particle size of 70 80 78 Particle 76 tomNum 1 ModelIndex 76 included CCC=0.4025 phi 71.7025 theta 113.0460 psi -100.6420 dx 1.1500 dy -1.6000 dz 3.1500 Extracting a particle size of 72 70 80 Particle 78 tomNum 1 ModelIndex 78 included CCC=0.3474 phi -112.2170 theta 100.2490 psi 117.4980 dx 2.1000 dy -2.4000 dz -3.2000 Extracting a particle size of 72 86 76 Particle 80 tomNum 1 ModelIndex 80 included CCC=0.3992 phi -117.9450 theta 85.3232 psi -70.7947 dx -0.2500 dy 2.5000 dz -2.4500 Extracting a particle size of 74 82 74 Particle 82 tomNum 1 ModelIndex 82 included CCC=0.3916 phi -163.2900 theta 50.2815 psi 105.2490 dx 0.3500 dy -5.1500 dz 0.2000 Extracting a particle size of 86 78 82 Particle 84 tomNum 1 ModelIndex 84 included CCC=0.3725 phi 17.4379 theta 104.2000 psi -50.4697 dx 2.1000 dy -3.1500 dz 0.2000 Extracting a particle size of 86 76 76 Particle 86 tomNum 1 ModelIndex 86 included CCC=0.3890 phi 61.0206 theta 100.6670 psi -25.3231 dx 1.0500 dy -0.0500 dz 3.3000 Extracting a particle size of 84 80 78 Particle 88 tomNum 1 ModelIndex 88 included CCC=0.3687 phi -160.5470 theta 102.4730 psi -37.6128 dx -1.5000 dy 1.1000 dz 2.1500 Extracting a particle size of 88 74 76 Particle 90 tomNum 1 ModelIndex 90 included CCC=0.3964 phi -84.2661 theta 78.1003 psi 93.2594 dx -0.8000 dy -0.5000 dz -1.1000 Extracting a particle size of 64 60 66 Particle 94 tomNum 1 ModelIndex 94 included CCC=0.3876 phi 140.6000 theta 84.7102 psi -72.3986 dx -0.0500 dy 1.8500 dz 3.3500 Extracting a particle size of 72 84 78 Particle 100 tomNum 1 ModelIndex 100 included CCC=0.3902 phi -151.4860 theta 92.1056 psi -113.7150 dx 1.9000 dy 0.4000 dz -3.3500 Extracting a particle size of 74 86 72 Particle 102 tomNum 1 ModelIndex 102 included CCC=0.3994 phi -84.5395 theta 61.6085 psi -31.3207 dx 1.6500 dy -1.6500 dz -2.2000 Extracting a particle size of 78 86 74 Particle 104 tomNum 1 ModelIndex 104 included CCC=0.3614 phi 41.3905 theta 81.5198 psi -63.5330 dx 1.6500 dy -2.1500 dz 3.3000 Extracting a particle size of 78 88 80 WARNING: Y axis minimum index out of range by 1 voxels! Particle 106 tomNum 1 ModelIndex 106 included CCC=0.3436 phi -58.6948 theta 50.6640 psi -53.5703 dx -0.1500 dy -1.4000 dz -0.9500 Extracting a particle size of 78 88 88 Particle 108 tomNum 1 ModelIndex 108 included CCC=0.3698 phi 46.1059 theta 89.8642 psi -133.6850 dx 0.4000 dy -2.7500 dz 2.0500 Extracting a particle size of 88 88 74 Particle 110 tomNum 1 ModelIndex 110 included CCC=0.3024 phi -127.2760 theta 57.6622 psi 112.9270 dx 1.8000 dy -3.3000 dz -1.3000 Extracting a particle size of 74 82 88 Particle 112 tomNum 1 ModelIndex 112 included CCC=0.3844 phi 101.3790 theta 141.7700 psi -83.9894 dx -1.1500 dy -1.7500 dz 4.8000 Extracting a particle size of 76 60 78 Particle 116 tomNum 1 ModelIndex 116 included CCC=0.3925 phi 126.1540 theta 103.7230 psi -55.2878 dx -0.5500 dy -0.5000 dz 0.0500 Extracting a particle size of 84 86 82 Particle 120 tomNum 1 ModelIndex 120 included CCC=0.3940 phi 26.5179 theta 95.6018 psi -156.3420 dx -2.8500 dy -2.0500 dz -1.1000 Extracting a particle size of 84 76 74 Particle 124 tomNum 1 ModelIndex 124 included CCC=0.4130 phi 29.1426 theta 101.7940 psi -138.7660 dx 0.9500 dy -3.2500 dz 0.3000 Extracting a particle size of 84 88 80 Particle 126 tomNum 1 ModelIndex 126 included CCC=0.3900 phi -6.8257 theta 11.1667 psi 59.5347 dx 1.9000 dy 1.2000 dz 0.1000 Extracting a particle size of 80 78 62 Particle 128 tomNum 1 ModelIndex 128 included CCC=0.3817 phi 30.2045 theta 142.8510 psi -148.9040 dx -2.5000 dy -2.2000 dz 3.4000 Extracting a particle size of 70 76 84 Particle 130 tomNum 1 ModelIndex 130 included CCC=0.3753 phi -86.7004 theta 56.1642 psi -47.5224 dx -0.8000 dy 0.8500 dz -0.5000 Extracting a particle size of 86 88 74 50 particles from Tom 1 have been added to the average Wrote average volume bpv_AvgVol_4P050.mrc Progressively generating a new average volume Particle 6 tomNum 1 ModelIndex 6 included CCC=0.3001 phi 86.9441 theta 107.6650 psi -70.6204 dx 1.0000 dy 0.1500 dz 2.4500 Extracting a particle size of 78 72 68 Particle 18 tomNum 1 ModelIndex 18 included CCC=0.2762 phi -119.9170 theta 73.1134 psi -65.5296 dx -0.3000 dy 0.9500 dz -2.8000 Extracting a particle size of 80 82 82 WARNING: Z axis minimum index out of range by 1 voxels! Particle 38 tomNum 1 ModelIndex 38 included CCC=0.2133 phi 15.7588 theta 132.0290 psi -145.6440 dx -1.0500 dy -1.4000 dz -0.2500 Extracting a particle size of 76 88 82 WARNING: Z axis minimum index out of range by 1 voxels! Particle 46 tomNum 1 ModelIndex 46 included CCC=0.2634 phi -132.5630 theta 80.5669 psi 172.1000 dx 1.0500 dy -1.6500 dz -0.1500 Extracting a particle size of 80 62 80 Particle 48 tomNum 1 ModelIndex 48 included CCC=0.1750 phi 67.8470 theta 111.5030 psi -111.5800 dx 0.5500 dy -2.0500 dz 2.7500 Extracting a particle size of 80 76 82 Particle 62 tomNum 1 ModelIndex 62 included CCC=0.2632 phi 57.3766 theta 73.9385 psi -163.4200 dx -0.9000 dy -1.5500 dz 1.2000 Extracting a particle size of 82 72 82 Particle 64 tomNum 1 ModelIndex 64 included CCC=0.2882 phi -161.6650 theta 75.9182 psi 123.1270 dx 1.3500 dy -3.3500 dz 0.8000 Extracting a particle size of 74 86 76 Particle 72 tomNum 1 ModelIndex 72 included CCC=0.2902 phi -102.6280 theta 81.5001 psi 114.1920 dx -0.8000 dy -1.7000 dz -1.4500 Extracting a particle size of 78 74 68 Particle 74 tomNum 1 ModelIndex 74 included CCC=0.2959 phi -125.7540 theta 129.1440 psi -24.4399 dx -1.0500 dy 0.4500 dz -2.5500 Extracting a particle size of 80 74 88 Particle 92 tomNum 1 ModelIndex 92 included CCC=0.2680 phi -133.1530 theta 123.0080 psi -174.0560 dx 3.4000 dy -1.7500 dz -1.6000 Extracting a particle size of 78 82 90 Particle 96 tomNum 1 ModelIndex 96 included CCC=0.2911 phi 64.8178 theta 117.5070 psi 13.3333 dx 1.5500 dy 0.9500 dz 1.3500 Extracting a particle size of 80 82 84 Particle 98 tomNum 1 ModelIndex 98 included CCC=0.2824 phi 115.7930 theta 120.4050 psi -83.4709 dx -0.4500 dy -1.0500 dz 0.4000 Extracting a particle size of 76 72 86 Particle 114 tomNum 1 ModelIndex 114 included CCC=0.2774 phi -96.9000 theta 58.0206 psi -71.2518 dx -0.4500 dy -0.1000 dz -1.5500 Extracting a particle size of 82 66 76 Particle 118 tomNum 1 ModelIndex 118 included CCC=0.2711 phi -116.3670 theta 31.7256 psi -15.9562 dx -1.5500 dy 0.0500 dz -0.4500 Extracting a particle size of 80 90 80 Particle 122 tomNum 1 ModelIndex 122 included CCC=0.2463 phi -85.3111 theta 48.6737 psi 109.0790 dx 2.5500 dy -1.8500 dz -2.2500 Extracting a particle size of 86 76 76 Particle 132 tomNum 1 ModelIndex 132 included CCC=0.2454 phi -120.1530 theta 47.3300 psi 168.1580 dx 2.1500 dy 0.8000 dz -0.3000 Extracting a particle size of 80 88 86 16 particles from Tom 1 have been added to the average Wrote average volume bpv_AvgVol_4P066.mrc Progressively generating a new average volume 0 particles from Tom 1 have been added to the average Wrote average volume bpv_AvgVol_4P066.mrc Total execution time : 55.279282 seconds Starting logWarningsAndErrors_mce ... This is PEET Version 1.11.0 Beta 08-Feb-2017. Copyright 2000-2017 The Regents of the University of Colorado. MATLAB. Copyright 1984-2017 The Mathworks, Inc. Created LOGFILE: bpv_WarningsAndErrors.log SUCCESSFULLY COMPLETED CHUNK DONE