*** Entries to program processchunks *** g = 1 n = 18 d = 5 c = 6E6.cmds P = 1 Non-option arguments: bigfoot,bigfoot,bigfoot,bigfoot,bear,bear,bear,bear,bear,bear,tubule,tubule,tubule,tubule,tubule,tubule,tubule,tubule,eclipse,eclipse,eclipse,eclipse,eclipse,eclipse,eclipse,eclipse,sanguine,sanguine 6E6 *** End of entries *** Shell PID: 29895 IMPORTANT: Ctrl-C does not work with this version of processchunks. Use or the -c option (-c defaults to processchunks.input). 0 OF 103 DONE SO FAR Running 6E6-start.com on bigfoot ... 6E6-start.com finished on bigfoot WARNING: User-supplied reference may be too small! Running 6E6-001.com on bigfoot ... Running 6E6-002.com on bigfoot ... Running 6E6-003.com on bigfoot ... Running 6E6-004.com on bigfoot ... Running 6E6-005.com on bear ... Running 6E6-006.com on bear ... Running 6E6-007.com on bear ... Running 6E6-008.com on bear ... Running 6E6-009.com on bear ... Running 6E6-010.com on bear ... Running 6E6-011.com on tubule ... Running 6E6-012.com on tubule ... Running 6E6-013.com on tubule ... Running 6E6-014.com on tubule ... Running 6E6-015.com on tubule ... Running 6E6-016.com on tubule ... Running 6E6-017.com on tubule ... Running 6E6-018.com on tubule ... Running 6E6-019.com on eclipse ... Running 6E6-020.com on eclipse ... Running 6E6-021.com on eclipse ... Running 6E6-022.com on eclipse ... Running 6E6-023.com on eclipse ... Running 6E6-024.com on eclipse ... Running 6E6-025.com on eclipse ... Running 6E6-026.com on eclipse ... Running 6E6-027.com on sanguine ... Running 6E6-028.com on sanguine ... 1 OF 103 DONE SO FAR 6E6-001.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! Running 6E6-029.com on bigfoot ... 6E6-002.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! Running 6E6-030.com on bigfoot ... 6E6-003.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! Running 6E6-031.com on bigfoot ... 6E6-004.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! WARNING: Best x was found at the end of the search range! WARNING: Best y was found at the end of the search range! Running 6E6-032.com on bigfoot ... 5 OF 103 DONE SO FAR 6E6-005.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! WARNING: Best x was found at the end of the search range! (5 times) Running 6E6-033.com on bear ... 6E6-008.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! WARNING: Best x was found at the end of the search range! 7 OF 103 DONE SO FAR 6E6-007.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! WARNING: Best x was found at the end of the search range! (3 times) 6E6-009.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-011.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-012.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-013.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-014.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 13 OF 103 DONE SO FAR 6E6-015.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-016.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-017.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-019.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-020.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-022.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-027.com finished on sanguine WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 20 OF 103 DONE SO FAR 6E6-006.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! WARNING: Best y was found at the end of the search range! (3 times) 6E6-010.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-018.com finished on tubule WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-021.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-023.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-024.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-028.com finished on sanguine WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 27 OF 103 DONE SO FAR 6E6-025.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-026.com finished on eclipse WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 29 OF 103 DONE SO FAR 6E6-033.com finished on bear WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 30 OF 103 DONE SO FAR 6E6-029.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-030.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-031.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 6E6-032.com finished on bigfoot WARNING: ../..//InitialRef_WGT.mrc not found. Disabling missing wedge compensation! 34 OF 103 DONE SO FAR Running 6E6-034-sync.com on bigfoot ... 6E6-034-sync.com finished on bigfoot Created LOGFILE: 6E6_WarningsAndErrors.log WARNING: Y axis minimum index out of range by 16 voxels! Running 6E6-035.com on bigfoot ... Running 6E6-036.com on bigfoot ... Running 6E6-037.com on bigfoot ... Running 6E6-038.com on bigfoot ... Running 6E6-039.com on bear ... Running 6E6-040.com on bear ... Running 6E6-041.com on bear ... Running 6E6-042.com on bear ... Running 6E6-043.com on bear ... Running 6E6-044.com on bear ... Running 6E6-045.com on tubule ... Running 6E6-046.com on tubule ... Running 6E6-047.com on tubule ... Running 6E6-048.com on tubule ... Running 6E6-049.com on tubule ... Running 6E6-050.com on tubule ... Running 6E6-051.com on tubule ... Running 6E6-052.com on tubule ... Running 6E6-053.com on eclipse ... Running 6E6-054.com on eclipse ... Running 6E6-055.com on eclipse ... Running 6E6-056.com on eclipse ... Running 6E6-057.com on eclipse ... Running 6E6-058.com on eclipse ... Running 6E6-059.com on eclipse ... Running 6E6-060.com on eclipse ... Running 6E6-061.com on sanguine ... Running 6E6-062.com on sanguine ... 35 OF 103 DONE SO FAR 6E6-035.com finished on bigfoot Running 6E6-063.com on bigfoot ... 6E6-036.com finished on bigfoot Running 6E6-064.com on bigfoot ... 6E6-037.com finished on bigfoot Running 6E6-065.com on bigfoot ... 38 OF 103 DONE SO FAR 6E6-038.com finished on bigfoot Running 6E6-066.com on bigfoot ... 39 OF 103 DONE SO FAR 6E6-039.com finished on bear Running 6E6-067.com on bear ... 6E6-041.com finished on bear 41 OF 103 DONE SO FAR 6E6-044.com finished on bear 6E6-045.com finished on tubule 6E6-047.com finished on tubule 6E6-049.com finished on tubule 45 OF 103 DONE SO FAR 6E6-052.com finished on tubule 6E6-053.com finished on eclipse 6E6-054.com finished on eclipse 6E6-055.com finished on eclipse 49 OF 103 DONE SO FAR 6E6-040.com finished on bear 6E6-042.com finished on bear 6E6-043.com finished on bear 6E6-046.com finished on tubule 6E6-048.com finished on tubule 6E6-050.com finished on tubule 6E6-056.com finished on eclipse 56 OF 103 DONE SO FAR 6E6-057.com finished on eclipse 6E6-059.com finished on eclipse 6E6-060.com finished on eclipse 6E6-061.com finished on sanguine 60 OF 103 DONE SO FAR 6E6-051.com finished on tubule 6E6-062.com finished on sanguine 62 OF 103 DONE SO FAR 6E6-058.com finished on eclipse 63 OF 103 DONE SO FAR 6E6-067.com finished on bear 64 OF 103 DONE SO FAR 6E6-064.com finished on bigfoot 6E6-065.com finished on bigfoot 66 OF 103 DONE SO FAR 6E6-063.com finished on bigfoot 6E6-066.com finished on bigfoot 68 OF 103 DONE SO FAR Running 6E6-068-sync.com on bigfoot ... 6E6-068-sync.com finished on bigfoot Created LOGFILE: 6E6_WarningsAndErrors.log WARNING: Y axis minimum index out of range by 16 voxels! Running 6E6-069.com on bigfoot ... Running 6E6-070.com on bigfoot ... Running 6E6-071.com on bigfoot ... Running 6E6-072.com on bigfoot ... Running 6E6-073.com on bear ... Running 6E6-074.com on bear ... Running 6E6-075.com on bear ... Running 6E6-076.com on bear ... Running 6E6-077.com on bear ... Running 6E6-078.com on bear ... Running 6E6-079.com on tubule ... Running 6E6-080.com on tubule ... Running 6E6-081.com on tubule ... Running 6E6-082.com on tubule ... Running 6E6-083.com on tubule ... Running 6E6-084.com on tubule ... Running 6E6-085.com on tubule ... Running 6E6-086.com on tubule ... Running 6E6-087.com on eclipse ... Running 6E6-088.com on eclipse ... Running 6E6-089.com on eclipse ... Running 6E6-090.com on eclipse ... Running 6E6-091.com on eclipse ... Running 6E6-092.com on eclipse ... Running 6E6-093.com on eclipse ... Running 6E6-094.com on eclipse ... Running 6E6-095.com on sanguine ... Running 6E6-096.com on sanguine ... 69 OF 103 DONE SO FAR 6E6-069.com finished on bigfoot Running 6E6-097.com on bigfoot ... 6E6-070.com finished on bigfoot Running 6E6-098.com on bigfoot ... 6E6-071.com finished on bigfoot Running 6E6-099.com on bigfoot ... 6E6-072.com finished on bigfoot Running 6E6-100.com on bigfoot ... 73 OF 103 DONE SO FAR 6E6-075.com finished on bear Running 6E6-101.com on bear ... 6E6-077.com finished on bear 6E6-078.com finished on bear 6E6-079.com finished on tubule 6E6-080.com finished on tubule 6E6-082.com finished on tubule 79 OF 103 DONE SO FAR 6E6-073.com finished on bear 6E6-074.com finished on bear 6E6-081.com finished on tubule 6E6-087.com finished on eclipse 6E6-088.com finished on eclipse 6E6-089.com finished on eclipse 6E6-090.com finished on eclipse 86 OF 103 DONE SO FAR 6E6-083.com finished on tubule 6E6-086.com finished on tubule 6E6-091.com finished on eclipse 89 OF 103 DONE SO FAR 6E6-076.com finished on bear 6E6-096.com finished on sanguine 91 OF 103 DONE SO FAR 6E6-084.com finished on tubule 6E6-085.com finished on tubule 6E6-092.com finished on eclipse 6E6-094.com finished on eclipse 6E6-095.com finished on sanguine 96 OF 103 DONE SO FAR 6E6-093.com finished on eclipse 97 OF 103 DONE SO FAR 6E6-101.com finished on bear 98 OF 103 DONE SO FAR 6E6-099.com finished on bigfoot 6E6-100.com finished on bigfoot 100 OF 103 DONE SO FAR 6E6-097.com finished on bigfoot 6E6-098.com finished on bigfoot 102 OF 103 DONE SO FAR ALL DONE - going to run 6E6-finish.com to reassemble Running 6E6-finish.com on bigfoot ... 6E6-finish.com finished on bigfoot Created LOGFILE: 6E6_WarningsAndErrors.log WARNING: Y axis minimum index out of range by 16 voxels! WARNING: Y axis minimum index out of range by 2 voxels! 103 OF 103 DONE SO FAR ALL DONE - nothing to reassemble Finished reassembling exitCode:0