*** Entries to program tilt ***
  InputProjections = WTI042413_1series4.ali
  OutputFile = WTI042413_1series4_full.rec
  ActionIfGPUFails = 2,2
  AdjustOrigin = 1
  FULLIMAGE = 1852 1856
  IMAGEBINNED = 1
  MODE = 1
  OFFSET = 0.0
  PERPENDICULAR = 1
  RADIAL = 0.35 0.05
  SCALE = 0.0 0.1
  SHIFT = 0.0 0.0
  SLICE = -1 -1
  SUBSETSTART = 0 0
  THICKNESS = 266
  TILTFILE = WTI042413_1series4.tlt
  TOTALSLICES = 0 1855
  UseGPU = 0
  XAXISTILT = 1.65
  XTILTFILE = WTI042413_1series4.xtilt
*** End of entries ***


 RO image file on unit   1 : WTI042413_1series4.ali     Size=     409524 K

 Number of columns, rows, sections .....    1852    1856      61
 Map mode ..............................    1   (16-bit integer)           
 Start cols, rows, sects, grid x,y,z ...    0     0     0    1852   1856     61
 Pixel spacing (Angstroms)..............   6.740      6.740      6.740    
 Cell angles ...........................   90.000   90.000   90.000
 Fast, medium, slow axes ...............    X    Y    Z
 Origin on x,y,z .......................    0.000       0.000       0.000    
 Minimum density .......................  -250.00                               
 Maximum density .......................   886.00                               
 Mean density ..........................   223.66                               
 tilt angles (original,current) ........   0.0   0.0   0.0   0.0   0.0   0.0
 Space group,# extra bytes,idtype,lens .        0        0        0        0

     6 Titles :
SerialEM: Digitized on Janelia Krios                    26-Apr-13  14:20:21    
    Tilt axis angle = 168.0, binning = 2  spot = 7  camera = 3                 
CCDERASER: Bad points replaced with interpolated values 26-Apr-13  17:17:47    
NEWSTACK: Images copied, undistorted                    28-May-13  11:02:55    
ctfPhaseFlip: CTF correction with phase flipping only   28-May-13  11:04:03    
CCDERASER: Bad points replaced with interpolated values 28-May-13  13:09:31    


 Radial weighting function parameters IRMAX =  648  IWIDE =   92

 Output map densities incremented by    0.00 and then multiplied by    0.10

 Output map is sectioned perpendicular to the tilt axis

 Data mode of output file is  1

 FORMATTED  ro  file opened: /home/cschwart/JaneliaFarms/WTI042413_1/series4/WTI042413_1series4.tlt

 FORMATTED  ro  file opened: /home/cschwart/JaneliaFarms/WTI042413_1/series4/WTI042413_1series4.xtilt

 Constant alpha tilt of   0.0 to be applied based on angles from file

 Global alpha tilt of   1.6 will be applied


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 Rows    0 to    0, (at intervals of   1) of the projection planes will be reconstructed.

 Thickness of reconstructed slice is  266 pixels.

 Full aligned stack will be assumed to be  1852 by  1856 pixels

 Aligned stack will be assumed to be a subset starting at     0     0

 Computed slices are part of a total volume from slice     1 to  1856
  Tilt angles were entered from a tilt file

 NEW image file on unit   2 : WTI042413_1series4_full.rec

 Projection angles:

   -58.94   -56.94   -54.92   -52.91   -50.92   -48.92   -46.93   -44.92
   -42.91   -40.90   -38.89   -36.89   -34.90   -32.91   -30.92   -28.93
   -26.94   -24.94   -22.93   -20.93   -18.93   -16.93   -14.93   -12.93
   -10.92    -8.92    -6.92    -4.91    -3.02    -1.12     0.78     2.68
     4.58     6.48     8.52    10.56    12.60    14.64    16.68    18.72
    20.72    22.72    24.73    26.73    28.73    30.77    32.80    34.84
    36.87    38.90    40.94    42.97    45.00    47.03    49.06    51.03
    53.00    54.96    57.01    59.06    61.11


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 Exiting after setting up output file for chunk writing
SUCCESSFULLY COMPLETED
CHUNK DONE