OLD image file on unit 1 : WTI042413_1series4_full.rec Size= 1785792 K Number of columns, rows, sections ..... 1852 266 1856 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 266 1856 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 896.4 0.000 Minimum density ....................... -250.00 Maximum density ....................... 886.00 Mean density .......................... 223.66 tilt angles (original,current) ........ 0.0 0.0 0.0 90.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 7 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 CCDERASER: Bad points replaced with interpolated values 26-Apr-13 17:17:47 NEWSTACK: Images copied, undistorted 28-May-13 11:02:55 ctfPhaseFlip: CTF correction with phase flipping only 28-May-13 11:04:03 CCDERASER: Bad points replaced with interpolated values 28-May-13 13:09:31 TILT: Tomographic reconstruction 28-May-13 13:09:58 RO image file on unit 2 : WTI042413_1series4_full-001.rbound Size= 29 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : WTI042413_1series4_full-002.rbound Size= 29 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : WTI042413_1series4_full-003.rbound Size= 29 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : WTI042413_1series4_full-004.rbound Size= 29 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : WTI042413_1series4_full-005.rbound Size= 29 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : WTI042413_1series4_full-006.rbound Size= 29 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : WTI042413_1series4_full-007.rbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines Name of input file: OLD image file on unit 2 : WTI042413_1series4_full.rec Size= 1785792 K Number of columns, rows, sections ..... 1852 266 1856 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 266 1856 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 896.4 0.000 Minimum density ....................... -250.00 Maximum density ....................... 886.00 Mean density .......................... 223.66 tilt angles (original,current) ........ 0.0 0.0 0.0 90.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 7 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 CCDERASER: Bad points replaced with interpolated values 26-Apr-13 17:17:47 NEWSTACK: Images copied, undistorted 28-May-13 11:02:55 ctfPhaseFlip: CTF correction with phase flipping only 28-May-13 11:04:03 CCDERASER: Bad points replaced with interpolated values 28-May-13 13:09:31 TILT: Tomographic reconstruction 28-May-13 13:09:58 If you make a mistake, interrupt with Ctrl-C instead of exiting with DONE Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Alter min/max/mean. Current values: -250.00 886.00 223.66 Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Number of columns, rows, sections ..... 1852 266 1856 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 266 1856 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 896.4 0.000 Minimum density ....................... -2125.5 Maximum density ....................... 1804.5 Mean density .......................... 4.8731 tilt angles (original,current) ........ 0.0 0.0 0.0 90.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 7 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 CCDERASER: Bad points replaced with interpolated values 26-Apr-13 17:17:47 NEWSTACK: Images copied, undistorted 28-May-13 11:02:55 ctfPhaseFlip: CTF correction with phase flipping only 28-May-13 11:04:03 CCDERASER: Bad points replaced with interpolated values 28-May-13 13:09:31 TILT: Tomographic reconstruction 28-May-13 13:09:58 SUCCESSFULLY COMPLETED CHUNK DONE