*** Entries to program ccderaser *** InputFile = WTI042413_1series4.st OutputFile = WTI042413_1series4_fixed.st FindPeaks = 1 PeakCriterion = 8 DiffCriterion = 6 GrowCriterion = 4. ScanCriterion = 3. MaximumRadius = 4.5 AnnulusWidth = 2.0 XYScanSize = 100 EdgeExclusionWidth = 4 PointModel = WTI042413_1series4_peak.mod BorderSize = 2 PolynomialOrder = 2 *** End of entries *** RO image file on unit 1 : WTI042413_1series4.st Size= 409529 K Number of columns, rows, sections ..... 1852 1856 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 1856 61 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -96.000 Maximum density ....................... 1228.0 Mean density .......................... 223.88 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 5120 0 0 2 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 NEW image file on unit 2 : WTI042413_1series4_fixed.st Section 0 - 10 pixels replaced in 8 peaks - Done Section 1 - 5 pixels replaced in 5 peaks - Done Section 2 - 5 pixels replaced in 5 peaks - Done Section 3 - 5 pixels replaced in 4 peaks - Done Section 4 - 5 pixels replaced in 5 peaks - Done Section 5 - 6 pixels replaced in 6 peaks - Done Section 6 - 6 pixels replaced in 6 peaks - Done Section 7 - 3 pixels replaced in 2 peaks - Done Section 8 - 3 pixels replaced in 3 peaks - Done Section 9 - 1 pixels replaced in 1 peaks - Done Section 10 - 2 pixels replaced in 2 peaks - Done Section 11 - 1 pixels replaced in 1 peaks - Done Section 12 - 1 pixels replaced in 1 peaks - Done Section 13 - 2 pixels replaced in 2 peaks - Done Section 14 - 7 pixels replaced in 7 peaks - Done Section 15 - 1 pixels replaced in 1 peaks - Done Section 16 - 3 pixels replaced in 3 peaks - Done Section 17 - 1 pixels replaced in 1 peaks - Done Section 18 - 3 pixels replaced in 3 peaks - Done Section 19 - 3 pixels replaced in 3 peaks - Done Section 20 - 5 pixels replaced in 4 peaks - Done Section 21 - 4 pixels replaced in 4 peaks - Done Section 22 - 4 pixels replaced in 4 peaks - Done Section 23 - 3 pixels replaced in 2 peaks - Done Section 24 - 3 pixels replaced in 3 peaks - Done Section 25 - 1 pixels replaced in 1 peaks - Done Section 26 - 3 pixels replaced in 3 peaks - Done Section 27 - 3 pixels replaced in 2 peaks - Done Section 28 - 2 pixels replaced in 2 peaks - Done Section 29 - 2 pixels replaced in 2 peaks - Done Section 30 - 4 pixels replaced in 4 peaks - Done Section 31 - 2 pixels replaced in 2 peaks - Done Section 32 - 2 pixels replaced in 2 peaks - Done Section 33 - 1 pixels replaced in 1 peaks - Done Section 34 - 1 pixels replaced in 1 peaks - Done Section 35 - 3 pixels replaced in 3 peaks - Done Section 36 - 9 pixels replaced in 2 peaks - Done Section 37 - 2 pixels replaced in 2 peaks - Done Section 38 - 4 pixels replaced in 4 peaks - Done Section 39 - 3 pixels replaced in 3 peaks - Done Section 40 - 3 pixels replaced in 2 peaks - Done Section 41 - 2 pixels replaced in 2 peaks - Done Section 42 - 1 pixels replaced in 1 peaks - Done Section 43 - 1 pixels replaced in 1 peaks - Done Section 44 - 1 pixels replaced in 1 peaks - Done Section 45 - 2 pixels replaced in 2 peaks - Done Section 46 - 2 pixels replaced in 2 peaks - Done Section 47 - 2 pixels replaced in 2 peaks - Done Section 48 - 2 pixels replaced in 2 peaks - Done Section 49 - 4 pixels replaced in 4 peaks - Done Section 50 - 1 pixels replaced in 1 peaks - Done Section 51 - 3 pixels replaced in 3 peaks - Done Section 52 - 3 pixels replaced in 3 peaks - Done Section 53 - 2 pixels replaced in 2 peaks - Done Section 54 - Done Section 55 - 2 pixels replaced in 2 peaks - Done Section 56 - 2 pixels replaced in 2 peaks - Done Section 57 - 1 pixels replaced in 1 peaks - Done Section 58 - 3 pixels replaced in 3 peaks - Done Section 59 - 1 pixels replaced in 1 peaks - Done Section 60 - 2 pixels replaced in 2 peaks - Done In the output model, contours have been sorted into 4 objects based on how much a peak exceeds the criterion. Object 1 has peaks that exceed the criterion by < 1 SD, object 2 has peaks that exceed the criterion by 1 - 2 SDs, object 4 has peaks that exceed the criterion by > 3 SDs SUCCESSFULLY COMPLETED