OLD image file on unit 1 : WTI042413_1series4_ctfcorr.ali Size= 409524 K Number of columns, rows, sections ..... 1852 1856 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 1856 61 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -112.54 Maximum density ....................... 1011.3 Mean density .......................... 223.59 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 5 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 CCDERASER: Bad points replaced with interpolated values 26-Apr-13 17:17:47 NEWSTACK: Images copied, undistorted 28-May-13 11:02:55 ctfPhaseFlip: CTF correction with phase flipping only 28-May-13 11:04:03 RO image file on unit 2 : WTI042413_1series4_ctfcorr-001.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-002.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-003.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-004.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-005.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-006.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-007.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-008.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-009.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-010.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-011.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-012.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-013.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-014.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-015.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-016.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-017.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-018.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-019.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-020.cbound Size= 15 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : WTI042413_1series4_ctfcorr-021.cbound Size= 8 K Number of columns, rows, sections ..... 1852 2 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 2 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : Name of input file: OLD image file on unit 2 : WTI042413_1series4_ctfcorr.ali Size= 409524 K Number of columns, rows, sections ..... 1852 1856 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 1856 61 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -112.54 Maximum density ....................... 1011.3 Mean density .......................... 223.59 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 5 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 CCDERASER: Bad points replaced with interpolated values 26-Apr-13 17:17:47 NEWSTACK: Images copied, undistorted 28-May-13 11:02:55 ctfPhaseFlip: CTF correction with phase flipping only 28-May-13 11:04:03 If you make a mistake, interrupt with Ctrl-C instead of exiting with DONE Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Alter min/max/mean. Current values: -112.54 1011.3 223.59 Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Number of columns, rows, sections ..... 1852 1856 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 1852 1856 61 Pixel spacing (Angstroms).............. 6.740 6.740 6.740 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -250.20 Maximum density ....................... 908.88 Mean density .......................... 223.62 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 5 Titles : SerialEM: Digitized on Janelia Krios 26-Apr-13 14:20:21 Tilt axis angle = 168.0, binning = 2 spot = 7 camera = 3 CCDERASER: Bad points replaced with interpolated values 26-Apr-13 17:17:47 NEWSTACK: Images copied, undistorted 28-May-13 11:02:55 ctfPhaseFlip: CTF correction with phase flipping only 28-May-13 11:04:03 SUCCESSFULLY COMPLETED CHUNK DONE