# THIS IS A COMMAND FILE TO RUN TILTXCORR AND DETERMINE CROSS-CORRELATION
# ALIGNMENT OF A TILT SERIES
#
#
# TO RUN TILTXCORR
#
####CreatedVersion#### 3.4.4
#
# Add BordersInXandY to use a centered region smaller than the default
# or XMinAndMax and YMinAndMax  to specify a non-centered region
#
$tiltxcorr -StandardInput
InputFile	MTEg5series6D.st
OutputFile	MTEg5series6D.prexf
TiltFile	MTEg5series6D.rawtlt
RotationAngle	-3.3
FilterSigma1	0.03
FilterRadius2	0.25
FilterSigma2	0.05
$if (-e ./savework) ./savework