*** Entries to program tilt ***
  InputProjections = MTEg5series6D.ali
  OutputFile = MTEg5series6D_full.rec
  ActionIfGPUFails = 2,2
  AdjustOrigin = 1
  EXCLUDELIST2 = 1
  FULLIMAGE = 4096 3072
  IMAGEBINNED = 1
  LOG = 0.0
  MODE = 1
  OFFSET = 0.0
  PERPENDICULAR = 1
  RADIAL = 0.35 0.05
  SCALE = 0.0 250.0
  SHIFT = 0.0 0.0
  SLICE = -1 -1
  SUBSETSTART = 0 0
  THICKNESS = 300
  TILTFILE = MTEg5series6D.tlt
  TOTALSLICES = 0 3071
  UseGPU = 0
  XAXISTILT = -2.07
  XTILTFILE = MTEg5series6D.xtilt
*** End of entries ***


 RO image file on unit   1 : MTEg5series6D.ali     Size=    1499137 K

 Number of columns, rows, sections .....    4096    3072      61
 Map mode ..............................    1   (16-bit integer)           
 Start cols, rows, sects, grid x,y,z ...    0     0     0    4096   3072     61
 Pixel spacing (Angstroms)..............   5.300      5.300      5.300    
 Cell angles ...........................   90.000   90.000   90.000
 Fast, medium, slow axes ...............    X    Y    Z
 Origin on x,y,z .......................    0.000       0.000       0.000    
 Minimum density .......................   22.000                               
 Maximum density .......................   971.00                               
 Mean density ..........................   377.60                               
 tilt angles (original,current) ........   0.0   0.0   0.0   0.0   0.0   0.0
 Space group,# extra bytes,idtype,lens .        0        0        0        0

     6 Titles :
SerialEM: Boulder 3DEM TF20                             16-Oct-13  16:00:27    
    Tilt axis angle = -3.3, binning = 1  spot = 6  camera = 1                  
CCDERASER: Bad points replaced with interpolated values 21-Oct-13  14:34:36    
NEWSTACK: Images copied, transformed                     5-Nov-13  14:18:16    
ctfPhaseFlip: CTF correction with phase flipping only   05-Nov-13  14:18:53    
CCDERASER: Bad points replaced with interpolated values  5-Nov-13  14:27:00    


 Radial weighting function parameters IRMAX = 1433  IWIDE =  204

 Output map densities incremented by    0.00 and then multiplied by  250.00

 Output map is sectioned perpendicular to the tilt axis

 Data mode of output file is  1

 Taking logarithm of input data plus     0.000

 FORMATTED  ro  file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.tlt

 FORMATTED  ro  file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.xtilt

 Constant alpha tilt of   0.0 to be applied based on angles from file

 Global alpha tilt of  -2.1 will be applied


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 Rows    0 to    0, (at intervals of   1) of the projection planes will be reconstructed.

 Thickness of reconstructed slice is  300 pixels.

 Full aligned stack will be assumed to be  4096 by  3072 pixels

 Aligned stack will be assumed to be a subset starting at     0     0

 Computed slices are part of a total volume from slice     1 to  3072
  Tilt angles were entered from a tilt file

 NEW image file on unit   2 : MTEg5series6D_full.rec

 Projection angles:

   -58.95   -56.95   -54.95   -52.95   -50.94   -48.94   -46.93   -44.93
   -42.90   -40.88   -38.86   -36.83   -34.81   -32.79   -30.76   -28.74
   -26.72   -24.70   -22.69   -20.68   -18.66   -16.65   -14.64   -12.63
   -10.65    -8.66    -6.68    -4.69    -2.71    -0.73     1.23     3.19
     5.15     7.11     9.07    11.03    12.99    15.00    17.02    19.03
    21.04    23.05    25.07    27.06    29.06    31.05    33.05    35.05
    37.03    39.00    40.98    42.96    44.94    46.94    48.94    50.93
    52.93    54.92    56.91    58.90


 ------------------------------------------------------------------------------
 Exiting after setting up output file for chunk writing
SUCCESSFULLY COMPLETED
CHUNK DONE