OLD image file on unit 1 : MTEg5series6D_full.rec Size= 7372801 K Number of columns, rows, sections ..... 4096 300 3072 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 300 3072 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 795.0 0.000 Minimum density ....................... 22.000 Maximum density ....................... 971.00 Mean density .......................... 377.60 tilt angles (original,current) ........ 0.0 0.0 0.0 90.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 7 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 CCDERASER: Bad points replaced with interpolated values 21-Oct-13 14:34:36 NEWSTACK: Images copied, transformed 5-Nov-13 14:18:16 ctfPhaseFlip: CTF correction with phase flipping only 05-Nov-13 14:18:53 CCDERASER: Bad points replaced with interpolated values 5-Nov-13 14:27:00 TILT: Tomographic reconstruction 5-Nov-13 14:31:21 RO image file on unit 2 : MTEg5series6D_full-001.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-002.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-003.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-004.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-005.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-006.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-007.rbound Size= 33 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines RO image file on unit 2 : MTEg5series6D_full-008.rbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 2 (32-bit real) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... -32000. Maximum density ....................... 32000. Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 1 Titles : parallel_write: boundary lines Name of input file: OLD image file on unit 2 : MTEg5series6D_full.rec Size= 7372801 K Number of columns, rows, sections ..... 4096 300 3072 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 300 3072 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 795.0 0.000 Minimum density ....................... 22.000 Maximum density ....................... 971.00 Mean density .......................... 377.60 tilt angles (original,current) ........ 0.0 0.0 0.0 90.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 7 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 CCDERASER: Bad points replaced with interpolated values 21-Oct-13 14:34:36 NEWSTACK: Images copied, transformed 5-Nov-13 14:18:16 ctfPhaseFlip: CTF correction with phase flipping only 05-Nov-13 14:18:53 CCDERASER: Bad points replaced with interpolated values 5-Nov-13 14:27:00 TILT: Tomographic reconstruction 5-Nov-13 14:31:21 If you make a mistake, interrupt with Ctrl-C instead of exiting with DONE Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Alter min/max/mean. Current values: 22.000 971.00 377.60 Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Number of columns, rows, sections ..... 4096 300 3072 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 300 3072 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 795.0 0.000 Minimum density ....................... -9779.5 Maximum density ....................... 6268.8 Mean density .......................... 129.38 tilt angles (original,current) ........ 0.0 0.0 0.0 90.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 7 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 CCDERASER: Bad points replaced with interpolated values 21-Oct-13 14:34:36 NEWSTACK: Images copied, transformed 5-Nov-13 14:18:16 ctfPhaseFlip: CTF correction with phase flipping only 05-Nov-13 14:18:53 CCDERASER: Bad points replaced with interpolated values 5-Nov-13 14:27:00 TILT: Tomographic reconstruction 5-Nov-13 14:31:21 SUCCESSFULLY COMPLETED CHUNK DONE