*** Entries to program ccderaser *** InputFile = MTEg5series6D.st OutputFile = MTEg5series6D_fixed.st FindPeaks = 1 PeakCriterion = 8. DiffCriterion = 6. GrowCriterion = 4. ScanCriterion = 3. MaximumRadius = 3.0 GiantCriterion = 12. ExtraLargeRadius = 8. BigDiffCriterion = 19. AnnulusWidth = 2.0 XYScanSize = 100 EdgeExclusionWidth = 4 PointModel = MTEg5series6D_peak.mod BoundaryObjects = 1 AllSectionObjects = 1 BorderSize = 2 PolynomialOrder = 2 *** End of entries *** RO image file on unit 1 : MTEg5series6D.st Size= 1499142 K Number of columns, rows, sections ..... 4096 3072 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 3072 61 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.0000 Maximum density ....................... 1116.0 Mean density .......................... 377.17 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 5120 0 0 2 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 NEW image file on unit 2 : MTEg5series6D_fixed.st Section 0 - 69 pixels replaced in 59 peaks - Done Section 1 - 89 pixels replaced in 68 peaks - Done Section 2 - 94 pixels replaced in 81 peaks - Done Section 3 - 106 pixels replaced in 85 peaks - Done Section 4 - 104 pixels replaced in 89 peaks - Done Section 5 - 87 pixels replaced in 75 peaks - Done Section 6 - 78 pixels replaced in 73 peaks - Done Section 7 - 97 pixels replaced in 78 peaks - Done Section 8 - 103 pixels replaced in 93 peaks - Done Section 9 - 94 pixels replaced in 79 peaks - Done Section 10 - 125 pixels replaced in 109 peaks - Done Section 11 - 140 pixels replaced in 116 peaks - Done Section 12 - 108 pixels replaced in 98 peaks - Done Section 13 - 129 pixels replaced in 108 peaks - Done Section 14 - 151 pixels replaced in 133 peaks - Done Section 15 - 108 pixels replaced in 95 peaks - Done Section 16 - 118 pixels replaced in 101 peaks - Done Section 17 - 146 pixels replaced in 123 peaks - Done Section 18 - 158 pixels replaced in 125 peaks - Done Section 19 - 159 pixels replaced in 134 peaks - Done Section 20 - 137 pixels replaced in 115 peaks - Done Section 21 - 161 pixels replaced in 142 peaks - Done Section 22 - 158 pixels replaced in 150 peaks - Done Section 23 - 163 pixels replaced in 146 peaks - Done Section 24 - 166 pixels replaced in 143 peaks - Done Section 25 - 147 pixels replaced in 135 peaks - Done Section 26 - 176 pixels replaced in 155 peaks - Done Section 27 - 149 pixels replaced in 139 peaks - Done Section 28 - 174 pixels replaced in 154 peaks - Done Section 29 - 172 pixels replaced in 151 peaks - Done Section 30 - 200 pixels replaced in 164 peaks - Done Section 31 - 184 pixels replaced in 163 peaks - Done Section 32 - 164 pixels replaced in 141 peaks - Done Section 33 - 176 pixels replaced in 163 peaks - Done Section 34 - 164 pixels replaced in 141 peaks - Done Section 35 - 169 pixels replaced in 141 peaks - Done Section 36 - 153 pixels replaced in 136 peaks - Done Section 37 - 159 pixels replaced in 136 peaks - Done Section 38 - 165 pixels replaced in 144 peaks - Done Section 39 - 146 pixels replaced in 124 peaks - Done Section 40 - 149 pixels replaced in 128 peaks - Done Section 41 - 140 pixels replaced in 121 peaks - Done Section 42 - 163 pixels replaced in 146 peaks - Done Section 43 - 147 pixels replaced in 121 peaks - Done Section 44 - 110 pixels replaced in 102 peaks - Done Section 45 - 131 pixels replaced in 112 peaks - Done Section 46 - 133 pixels replaced in 120 peaks - Done Section 47 - 132 pixels replaced in 121 peaks - Done Section 48 - 140 pixels replaced in 119 peaks - Done Section 49 - 133 pixels replaced in 115 peaks - Done Section 50 - 103 pixels replaced in 98 peaks - Done Section 51 - 111 pixels replaced in 100 peaks - Done Section 52 - 102 pixels replaced in 93 peaks - Done Section 53 - 102 pixels replaced in 96 peaks - Done Section 54 - 75 pixels replaced in 71 peaks - Done Section 55 - 83 pixels replaced in 78 peaks - Done Section 56 - 94 pixels replaced in 83 peaks - Done Section 57 - 80 pixels replaced in 71 peaks - Done Section 58 - 69 pixels replaced in 61 peaks - Done Section 59 - 68 pixels replaced in 66 peaks - Done Section 60 - 51 pixels replaced in 49 peaks - Done In the output model, contours have been sorted into 4 objects based on how much a peak exceeds the criterion. Object 1 has peaks that exceed the criterion by < 1 SD, object 2 has peaks that exceed the criterion by 1 - 2 SDs, object 4 has peaks that exceed the criterion by > 3 SDs SUCCESSFULLY COMPLETED CHUNK DONE