OLD image file on unit 1 : MTEg5series6D_ctfcorr.ali Size= 1499137 K Number of columns, rows, sections ..... 4096 3072 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 3072 61 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 55.366 Maximum density ....................... 1005.7 Mean density .......................... 378.07 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 5 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 CCDERASER: Bad points replaced with interpolated values 21-Oct-13 14:34:36 NEWSTACK: Images copied, transformed 5-Nov-13 14:18:16 ctfPhaseFlip: CTF correction with phase flipping only 05-Nov-13 14:18:53 RO image file on unit 2 : MTEg5series6D_ctfcorr-001.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-002.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-003.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-004.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-005.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-006.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-007.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-008.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-009.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-010.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-011.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-012.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-013.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-014.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-015.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-016.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-017.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-018.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-019.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-020.cbound Size= 17 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : RO image file on unit 2 : MTEg5series6D_ctfcorr-021.cbound Size= 9 K Number of columns, rows, sections ..... 4096 1 2 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 1 2 Pixel spacing (Angstroms).............. 1.000 1.000 1.000 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 0.10000E+38 Maximum density ....................... -0.10000E+38 Mean density .......................... 0.0000 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 0 Titles : Name of input file: OLD image file on unit 2 : MTEg5series6D_ctfcorr.ali Size= 1499137 K Number of columns, rows, sections ..... 4096 3072 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 3072 61 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 55.366 Maximum density ....................... 1005.7 Mean density .......................... 378.07 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 5 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 CCDERASER: Bad points replaced with interpolated values 21-Oct-13 14:34:36 NEWSTACK: Images copied, transformed 5-Nov-13 14:18:16 ctfPhaseFlip: CTF correction with phase flipping only 05-Nov-13 14:18:53 If you make a mistake, interrupt with Ctrl-C instead of exiting with DONE Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Alter min/max/mean. Current values: 55.366 1005.7 378.07 Options: org, cel, dat, del, map, sam, tlt, tlt_orig, tlt_rot, lab, mmm, rms, fixpixel, feipixel, fixextra, fixmode, invertorg, setmmm, real, fft, help, OR done Enter option: Number of columns, rows, sections ..... 4096 3072 61 Map mode .............................. 1 (16-bit integer) Start cols, rows, sects, grid x,y,z ... 0 0 0 4096 3072 61 Pixel spacing (Angstroms).............. 5.300 5.300 5.300 Cell angles ........................... 90.000 90.000 90.000 Fast, medium, slow axes ............... X Y Z Origin on x,y,z ....................... 0.000 0.000 0.000 Minimum density ....................... 22.866 Maximum density ....................... 971.09 Mean density .......................... 378.09 tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0 Space group,# extra bytes,idtype,lens . 0 0 0 0 5 Titles : SerialEM: Boulder 3DEM TF20 16-Oct-13 16:00:27 Tilt axis angle = -3.3, binning = 1 spot = 6 camera = 1 CCDERASER: Bad points replaced with interpolated values 21-Oct-13 14:34:36 NEWSTACK: Images copied, transformed 5-Nov-13 14:18:16 ctfPhaseFlip: CTF correction with phase flipping only 05-Nov-13 14:18:53 SUCCESSFULLY COMPLETED CHUNK DONE