Batchruntomo started on data set, Mon Oct 21 14:34:31 2013
Starting data set MTEg5series6D
starting eTomo with log in /home/mast/.etomologs/etomo_err_Oct-21-143431.log
Removing X-rays with Ccderaser (running eraser.com)
Successfully finished eraser.com   in 00:44.2
Getting statistics for fixed stack (running MTEg5series6D_fixed.st.stats.com)
Successfully finished MTEg5series6D_fixed.st.stats.com   in 00:18.2
 
 all    56.0000 (@ z=   35) 1116.0000 (@ z=   59      )  377.1708    82.6065
Views with locally extreme values:  25  33  40
 
Archiving original stack as compressed difference file
Running archiveorig.com
Successfully finished archiveorig.com   in 01:06.2
Finding coarse alignment by cross-correlation with Tiltxcorr (running xcorr.com)
Successfully finished xcorr.com   in 00:14.2
Making coarse aligned stack (running prenewst.com)
Successfully finished prenewst.com   in 01:08.1
Finding seed points for fiducial model (running autofidseed.com)
Successfully finished autofidseed.com   in 00:15.2
49 candidate points, including 12 clustered and 28 elongated
Final:   total points accepted = 9
Tracking beads with Beadtrack, run # 1 (running track.com)
Successfully finished track.com   in 00:04.2
 Total points missing =           2
Tracking beads with Beadtrack, run # 2 (running track.com)
Successfully finished track.com   in 00:02.2
 Total points missing =           2
Doing fine alignment with no distortion or local alignments, with robust fitting (running align.com)
Successfully finished align.com   in 00:02.2
 Residual error mean and sd:     0.843   0.793
 Residual error weighted mean:   0.658
Doing fine alignment with no distortion, without local alignments, with robust fitting (running align.com)
Successfully finished align.com   in 00:02.2
 Residual error mean and sd:     0.842   0.791
 Residual error weighted mean:   0.658
Making final aligned stack (running newst.com)
Successfully finished newst.com   in 00:41.1
Making tomogram by back-projection (running tilt.com in multiple chunks using GPU)
Successfully finished tilt.com   in 00:29.0
Completed dataset MTEg5series6D
Batchruntomo finished with data set, Mon Oct 21 14:39:42 2013