*** Entries to program tiltalign *** ModelFile = MTEg5series6D.fid ImageFile = MTEg5series6D.preali ImagesAreBinned = 2 OutputModelFile = MTEg5series6D.3dmod OutputResidualFile = MTEg5series6D.resid OutputFidXYZFile = MTEg5series6Dfid.xyz OutputTiltFile = MTEg5series6D.tlt OutputXAxisTiltFile = MTEg5series6D.xtilt OutputTransformFile = MTEg5series6D.tltxf ExcludeList = 1 RotationAngle = -3.3 TiltFile = MTEg5series6D.rawtlt AngleOffset = 0.99 BeamTiltOption = 0 RotOption = 1 RotDefaultGrouping = 5 LocalRotOption = 3 LocalRotDefaultGrouping = 6 TiltOption = 5 TiltDefaultGrouping = 5 LocalTiltOption = 5 LocalTiltDefaultGrouping = 6 MagReferenceView = 1 MagOption = 1 MagDefaultGrouping = 4 LocalMagReferenceView = 1 LocalMagOption = 3 LocalMagDefaultGrouping = 7 XStretchOption = 0 XStretchDefaultGrouping = 7 LocalXStretchOption = 0 LocalXStretchDefaultGrouping = 7 SkewOption = 0 SkewDefaultGrouping = 11 LocalSkewOption = 0 LocalSkewDefaultGrouping = 11 ResidualReportCriterion = -2.0 SurfacesToAnalyze = 1 MetroFactor = 0.25 MaximumCycles = 1000 RobustFitting = 1 KFactorScaling = 0.9 AxisZShift = -5.5 ShiftZFromOriginal = 1 LocalAlignments = 0 OutputLocalFile = MTEg5series6Dlocal.xf TargetPatchSizeXandY = 700,700 MinSizeOrOverlapXandY = 0.5,0.5 MinFidsTotalAndEachSurface = 8,0 FixXYZCoordinates = 0 LocalOutputOptions = 1,0,1 *** End of entries *** FORMATTED new file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.tlt FORMATTED new file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.xtilt FORMATTED new file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.tltxf FORMATTED ro file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.rawtlt Variable mappings View Rotation Tilt (+ incr.) Mag Comp Dmag Skew 2 rot 2 tilt 2 fixed fixed fixed fixed 3 rot 3 t 2+ 5 mag 3 fixed fixed fixed 4 rot 4 t 2+ 5 mag 4 fixed fixed fixed 5 rot 5 tilt 5 mag 5 fixed fixed fixed 6 rot 6 t 5+ 9 mag 6 fixed fixed fixed 7 rot 7 t 5+ 9 mag 7 fixed fixed fixed 8 rot 8 t 5+ 9 mag 8 fixed fixed fixed 9 rot 9 tilt 9 mag 9 fixed fixed fixed 10 rot 10 t 9+ 14 mag 10 fixed fixed fixed 11 rot 11 t 9+ 14 mag 11 fixed fixed fixed 12 rot 12 t 9+ 14 mag 12 fixed fixed fixed 13 rot 13 t 9+ 14 mag 13 fixed fixed fixed 14 rot 14 tilt 14 mag 14 fixed fixed fixed 15 rot 15 t 14+ 19 mag 15 fixed fixed fixed 16 rot 16 t 14+ 19 mag 16 fixed fixed fixed 17 rot 17 t 14+ 19 mag 17 fixed fixed fixed 18 rot 18 t 14+ 19 mag 18 fixed fixed fixed 19 rot 19 tilt 19 mag 19 fixed fixed fixed 20 rot 20 t 19+fix mag 20 fixed fixed fixed 21 rot 21 t 19+fix mag 21 fixed fixed fixed 22 rot 22 t 19+fix mag 22 fixed fixed fixed 23 rot 23 t 19+fix mag 23 fixed fixed fixed 24 rot 24 t 19+fix mag 24 fixed fixed fixed 25 rot 25 fixed mag 25 fixed fixed fixed 26 rot 26 t 32+fix mag 26 fixed fixed fixed 27 rot 27 t 32+fix mag 27 fixed fixed fixed 28 rot 28 t 32+fix mag 28 fixed fixed fixed 29 rot 29 t 32+fix mag 29 fixed fixed fixed 30 rot 30 t 32+fix mag 30 fixed fixed fixed 31 rot 31 t 32+fix mag 31 fixed fixed fixed 32 rot 32 tilt 32 mag 32 fixed fixed fixed 33 rot 33 t 32+ 38 mag 33 fixed fixed fixed 34 rot 34 t 32+ 38 mag 34 fixed fixed fixed 35 rot 35 t 32+ 38 mag 35 fixed fixed fixed 36 rot 36 t 32+ 38 mag 36 fixed fixed fixed 37 rot 37 t 32+ 38 mag 37 fixed fixed fixed 38 rot 38 tilt 38 mag 38 fixed fixed fixed 39 rot 39 t 38+ 44 mag 39 fixed fixed fixed 40 rot 40 t 38+ 44 mag 40 fixed fixed fixed 41 rot 41 t 38+ 44 mag 41 fixed fixed fixed 42 rot 42 t 38+ 44 mag 42 fixed fixed fixed 43 rot 43 t 38+ 44 mag 43 fixed fixed fixed 44 rot 44 tilt 44 mag 44 fixed fixed fixed 45 rot 45 t 44+ 49 mag 45 fixed fixed fixed 46 rot 46 t 44+ 49 mag 46 fixed fixed fixed 47 rot 47 t 44+ 49 mag 47 fixed fixed fixed 48 rot 48 t 44+ 49 mag 48 fixed fixed fixed 49 rot 49 tilt 49 mag 49 fixed fixed fixed 50 rot 50 t 49+ 54 mag 50 fixed fixed fixed 51 rot 51 t 49+ 54 mag 51 fixed fixed fixed 52 rot 52 t 49+ 54 mag 52 fixed fixed fixed 53 rot 53 t 49+ 54 mag 53 fixed fixed fixed 54 rot 54 tilt 54 mag 54 fixed fixed fixed 55 rot 55 t 54+ 58 mag 55 fixed fixed fixed 56 rot 56 t 54+ 58 mag 56 fixed fixed fixed 57 rot 57 t 54+ 58 mag 57 fixed fixed fixed 58 rot 58 tilt 58 mag 58 fixed fixed fixed 59 rot 59 t 58+ 61 mag 59 fixed fixed fixed 60 rot 60 t 58+ 61 mag 60 fixed fixed fixed 61 rot 61 tilt 61 mag 61 fixed fixed fixed Variable Metric minimization Initial F: 2.246832 Cycle 10 1.417459 Cycle 20 1.040350 Cycle 30 0.990133 Cycle 40 0.960869 Cycle 50 0.938038 Cycle 60 0.929744 Cycle 70 0.929327 Number of cycles : 77 Final F : 0.929311 Starting robust fitting with 6 weight groups: 6 view groups in 1 rings Total cycles for robust fitting: 254 Final F : 0.595425 Final mean and max weight change 0.0007 0.0043 600 weights: 26 are 0, 31 are < .1, 34 are < .2, 51 ( 8.5%) are < .5 60 views, 131 geometric variables, 10 3-D points, 600 projection points Ratio of total measured values to all unknowns = 1200/ 276 = 4.35 At minimum tilt, rotation angle is -4.17 view rotation tilt deltilt mag dmag skew mean resid 2 -4.5 58.9 -0.09 1.0000 0.0000 0.00 2.67 3 -4.3 56.9 -0.08 1.0000 0.0000 0.00 2.05 4 -4.2 54.9 -0.07 1.0004 0.0000 0.00 1.64 5 -4.1 52.9 -0.06 1.0005 0.0000 0.00 1.41 6 -4.0 50.9 -0.06 1.0000 0.0000 0.00 1.35 7 -4.1 48.9 -0.05 1.0000 0.0000 0.00 0.97 8 -4.0 46.9 -0.05 1.0003 0.0000 0.00 0.77 9 -4.0 44.9 -0.05 1.0005 0.0000 0.00 0.68 10 -4.0 43.0 -0.03 1.0004 0.0000 0.00 0.70 11 -4.0 41.0 -0.01 1.0001 0.0000 0.00 0.68 12 -4.0 39.0 0.01 1.0011 0.0000 0.00 0.52 13 -4.0 37.0 0.04 1.0009 0.0000 0.00 0.37 14 -4.0 35.0 0.06 1.0013 0.0000 0.00 0.45 15 -4.0 33.1 0.06 1.0013 0.0000 0.00 0.46 16 -4.0 31.1 0.06 1.0014 0.0000 0.00 0.72 17 -4.0 29.1 0.07 1.0015 0.0000 0.00 0.56 18 -4.0 27.1 0.07 1.0015 0.0000 0.00 0.41 19 -4.1 25.1 0.08 1.0014 0.0000 0.00 0.32 20 -4.0 23.1 0.06 1.0013 0.0000 0.00 0.44 21 -4.0 21.0 0.05 1.0018 0.0000 0.00 0.53 22 -4.1 19.0 0.04 1.0023 0.0000 0.00 0.45 23 -4.1 17.0 0.03 1.0026 0.0000 0.00 0.93 24 -4.1 15.0 0.01 1.0029 0.0000 0.00 0.95 25 -4.1 13.0 0.00 1.0023 0.0000 0.00 0.75 26 -4.1 11.0 0.04 1.0023 0.0000 0.00 0.71 27 -4.1 9.1 0.08 1.0027 0.0000 0.00 0.78 28 -4.1 7.1 0.12 1.0024 0.0000 0.00 0.74 29 -4.1 5.2 0.16 1.0021 0.0000 0.00 0.63 30 -4.2 3.2 0.20 1.0031 0.0000 0.00 0.50 31 -4.2 1.2 0.24 1.0034 0.0000 0.00 0.39 32 -4.2 -0.7 0.28 1.0032 0.0000 0.00 0.39 33 -4.2 -2.7 0.30 1.0032 0.0000 0.00 0.37 34 -4.2 -4.7 0.32 1.0033 0.0000 0.00 0.44 35 -4.2 -6.7 0.33 1.0030 0.0000 0.00 0.35 36 -4.2 -8.7 0.35 1.0031 0.0000 0.00 0.43 37 -4.3 -10.6 0.36 1.0029 0.0000 0.00 0.43 38 -4.2 -12.6 0.38 1.0030 0.0000 0.00 0.40 39 -4.3 -14.6 0.37 1.0028 0.0000 0.00 0.31 40 -4.3 -16.7 0.36 1.0029 0.0000 0.00 0.31 41 -4.3 -18.7 0.35 1.0027 0.0000 0.00 0.41 42 -4.3 -20.7 0.33 1.0027 0.0000 0.00 0.29 43 -4.3 -22.7 0.32 1.0027 0.0000 0.00 0.39 44 -4.3 -24.7 0.31 1.0025 0.0000 0.00 0.32 45 -4.3 -26.7 0.29 1.0025 0.0000 0.00 0.31 46 -4.3 -28.7 0.27 1.0023 0.0000 0.00 0.47 47 -4.3 -30.8 0.25 1.0021 0.0000 0.00 0.46 48 -4.3 -32.8 0.22 1.0023 0.0000 0.00 0.54 49 -4.3 -34.8 0.20 1.0021 0.0000 0.00 0.43 50 -4.3 -36.8 0.18 1.0017 0.0000 0.00 0.53 51 -4.4 -38.9 0.15 1.0018 0.0000 0.00 0.67 52 -4.3 -40.9 0.13 1.0017 0.0000 0.00 0.64 53 -4.3 -42.9 0.11 1.0016 0.0000 0.00 0.67 54 -4.3 -44.9 0.08 1.0012 0.0000 0.00 0.66 55 -4.4 -46.9 0.08 1.0012 0.0000 0.00 0.68 56 -4.3 -48.9 0.07 1.0010 0.0000 0.00 0.75 57 -4.4 -50.9 0.07 1.0012 0.0000 0.00 0.79 58 -4.3 -52.9 0.06 1.0002 0.0000 0.00 0.92 59 -4.3 -54.9 0.06 1.0001 0.0000 0.00 0.94 60 -4.3 -56.9 0.06 0.9996 0.0000 0.00 0.97 61 -4.3 -59.0 0.06 1.0000 0.0000 0.00 0.99 3-D point coordinates (with centroid zero) # X Y Z obj cont mean resid 1 -143.09 -561.41 -28.72 1 1 0.46 2 -239.68 380.73 7.44 1 2 0.58 3 -119.08 58.46 52.91 1 3 0.72 4 44.85 558.69 9.19 1 4 0.49 5 33.79 -500.93 -32.89 1 5 0.51 6 -648.86 -428.93 3.95 1 6 1.60 7 414.48 580.67 11.59 1 7 0.54 8 576.10 505.40 4.52 1 8 0.58 9 384.86 -194.53 -24.12 1 9 0.99 10 -303.37 -398.15 -3.86 1 10 0.33 Midpoint of Z range relative to centroid in Z: 10.01 FORMATTED new file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.resid Residual error mean and sd: 0.680 0.821 Residual error weighted mean: 0.520 Projection points with large residuals obj cont view index coordinates residuals # of # # # X Y X Y S.D. Weights 1 1 16 999.61 275.04 -2.02 0.04 4.23 0.0000 1 6 2 748.45 427.16 8.35 2.65 3.81 0.0000 1 7 28 1663.68 1373.19 -2.60 0.69 3.80 0.0000 1 9 11 1417.11 614.38 -1.75 0.55 3.25 0.0030 1 9 23 1541.89 604.58 2.28 -0.80 3.20 0.0000 1 6 53 663.99 432.99 2.70 -0.70 3.06 0.0000 1 6 6 695.42 429.88 5.06 0.89 3.04 0.0000 1 6 58 726.20 429.89 3.72 -0.84 3.02 0.0000 1 6 59 739.37 429.22 3.85 -0.90 2.94 0.0000 1 8 42 1780.72 1287.90 0.46 -0.80 2.89 0.3931 1 7 27 1660.02 1372.99 -2.11 1.15 2.86 0.0000 1 9 24 1548.85 603.77 2.21 -0.51 2.85 0.0000 1 6 3 735.57 427.63 6.57 2.19 2.80 0.0000 1 6 61 767.95 427.61 3.68 -0.83 2.77 0.0000 1 6 50 631.59 434.63 1.91 -0.36 2.75 0.0000 1 1 17 1001.43 274.50 -1.46 0.28 2.74 0.1074 1 6 60 753.48 428.71 3.55 -1.16 2.73 0.0000 1 6 55 687.78 431.73 2.82 -0.50 2.71 0.0000 1 6 56 700.28 430.86 2.95 -0.39 2.61 0.0000 1 6 57 713.02 430.52 3.16 -0.61 2.59 0.0000 1 6 54 675.95 432.35 2.48 -0.59 2.53 0.0000 1 6 7 682.79 431.23 3.73 0.64 2.50 0.0000 1 7 25 1650.84 1376.21 -1.99 -0.90 2.34 0.0000 1 6 46 594.62 436.62 0.93 -0.07 2.21 0.3276 1 9 51 1485.52 605.38 -1.90 0.12 2.13 0.0000 1 9 50 1496.03 604.18 -1.55 0.52 2.12 0.0000 1 6 5 709.24 429.46 4.53 1.03 2.09 0.0000 1 6 4 722.56 428.61 5.28 1.64 2.03 0.0000 1 3 34 1091.77 889.90 0.70 -0.27 2.00 0.7805 FORMATTED new file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6Dfid.xyz SURFACE ANALYSIS: The following parameters are appropriate if fiducials are all on one surface Fit of one plane to all fiducials: Adjusted slope = -0.0358 Fit of one plane to points on top surface: # of points = 10 Z axis intercept = 0.00 Adjusted slope = -0.0358 Mean residual = 10.559 X axis tilt needed = -2.50 Incremental tilt angle change = 2.05 Total tilt angle change = 3.04 Unbinned thickness needed to contain centers of all fiducials = 128. Incremental unbinned shift needed to center range of fiducials in Z = 0.2 Total unbinned shift needed to center range of fiducials in Z = -5.3 *** Entries to program xfproduct *** InputFile1 = MTEg5series6D.prexg InputFile2 = MTEg5series6D.tltxf OutputFile = MTEg5series6D_fid.xf ScaleShifts = 1.0,2.0 *** End of entries *** FORMATTED ro file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.prexg FORMATTED ro file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D.tltxf 61 transforms in first file 61 transforms in second file FORMATTED new file opened: /home/NOBACKUP/mast/MTEg5_101013/MTEg5series6D/MTEg5series6D_fid.xf 61 new transforms written SUCCESSFULLY COMPLETED